Detailed information NTG0160867

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: CFter6_RS21775
• Genome accession: NZ_CP013232
• Coordinates: 4978870..4980348 (-)
• Length: 492 a.a.
• NCBI ID: WP_061541693.1
• Uniprot ID: A0A127PHP5
• Organism: Collimonas fungivorans strain Ter6
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4973870..4985348

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CFter6_RS21765 (CFter6_4752)	-	4974841..4977765 (-)	2925	WP_014007854.1	ribonucleoside-diphosphate reductase subunit alpha	-
CFter6_RS21770 (CFter6_4754)	ampD	4978216..4978857 (-)	642	WP_061541692.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
CFter6_RS21775 (CFter6_4755)	pilR	4978870..4980348 (-)	1479	WP_061541693.1	sigma-54-dependent transcriptional regulator	Regulator
CFter6_RS21780 (CFter6_4756)	-	4980373..4982112 (-)	1740	WP_061541694.1	sensor histidine kinase	-
CFter6_RS21785 (CFter6_4757)	-	4982211..4982480 (-)	270	WP_061541695.1	PP0621 family protein	-
CFter6_RS21790 (CFter6_4758)	-	4982477..4983286 (-)	810	WP_061541696.1	cytochrome C assembly family protein	-
CFter6_RS21795 (CFter6_4759)	ffh	4983559..4984926 (+)	1368	WP_041742543.1	signal recognition particle protein	-

Sequence

Protein

• Length: 492 a.a.
• Molecular weight: 52988.73 Da
• Isoelectric Point: 4.9981

>NTDB_id=160867 CFter6_RS21775 WP_061541693.1 4978870..4980348(-) (pilR) [Collimonas fungivorans strain Ter6]
MSSPRILVVDDEAHLRELLEIALVKMGLDVDSADSLSAARSHLAQNEYALVLTDMRLPDGLGIELVREVSAGEKVIPIAV
ITAYGSADNAVMALKAGAFDYLSKPVALDQLRLMVQSALRVGKPVENLRPAADSKLRAGSSSALRLIGQSAAMQELRTQI
VRLARSMAPVAITGESGSGKELAARDIHALSPRADKPFVAVNCGAIPEALMEAEFFGYRKGAFTGAADDRDGFFQAANGG
TLLLDEVADLPLAMQVKLLRAIQERRVRKVGATVEEAVDVRLVSATHQNLAECVESGRFRQDLYYRLNVIELKLPPLRER
LDDIGLLVAAILARLSTFTPEAEQVTLAPAALSALCAYAFPGNVRELENILERALAFANDGVIEVADLGLKGGQGRPAEM
PDLADHYSEAAAVAGVPMATNLESAAPGAAVQLNGGELPSSLPDYLDDIERDVIRQALTRTHFNRTKAADLLGISFRQLR
YRMQRLSIHEQD

Nucleotide

• Length: 1479 bp

>NTDB_id=160867 CFter6_RS21775 WP_061541693.1 4978870..4980348(-) (pilR) [Collimonas fungivorans strain Ter6]
ATGAGCTCACCCCGTATTCTGGTTGTTGACGACGAAGCGCACCTGCGCGAACTGCTGGAAATCGCCTTGGTCAAGATGGG
GCTGGATGTCGACAGCGCCGACAGCCTGTCCGCTGCGCGCAGCCATCTGGCGCAAAATGAATATGCGCTGGTCCTGACCG
ACATGCGCCTGCCGGACGGGCTCGGAATCGAGCTGGTGCGCGAAGTCAGCGCTGGCGAAAAGGTCATACCGATTGCCGTG
ATCACCGCTTATGGCAGCGCCGACAATGCCGTCATGGCGCTGAAAGCAGGCGCTTTCGATTATTTATCGAAACCGGTGGC
GCTGGACCAACTGCGCCTGATGGTGCAGTCGGCTCTGCGTGTCGGTAAGCCGGTGGAGAACCTGCGTCCGGCGGCGGACT
CGAAGCTGCGCGCCGGCTCAAGCTCGGCGTTGCGCCTCATCGGCCAGTCTGCCGCCATGCAGGAATTACGCACGCAGATC
GTGCGCCTGGCGCGCAGCATGGCGCCGGTGGCGATCACCGGCGAGTCCGGCAGCGGCAAGGAACTGGCGGCGCGCGATAT
CCATGCGCTCAGTCCGCGCGCCGACAAGCCGTTTGTCGCCGTCAACTGCGGCGCCATCCCGGAAGCCTTGATGGAAGCGG
AGTTCTTTGGCTATCGCAAAGGCGCGTTTACCGGCGCCGCCGACGACCGCGACGGTTTTTTCCAGGCCGCCAACGGCGGC
ACCTTGCTGCTGGATGAGGTCGCCGACCTGCCGCTGGCGATGCAGGTCAAGCTGTTGCGTGCGATCCAGGAGCGCCGCGT
GCGCAAGGTTGGGGCGACGGTGGAGGAGGCGGTAGATGTGCGCCTGGTCAGCGCCACCCACCAGAATCTGGCCGAGTGTG
TCGAATCAGGTAGATTTCGCCAGGATTTGTACTATCGTTTGAATGTCATCGAATTAAAATTGCCGCCGCTGCGCGAGCGG
CTGGACGACATCGGCCTGCTGGTCGCCGCGATCCTGGCGCGCTTGTCGACGTTTACACCGGAGGCGGAACAGGTGACGCT
GGCGCCGGCGGCGTTGTCGGCGCTGTGCGCTTATGCGTTTCCCGGCAATGTGCGCGAACTGGAAAATATCCTGGAGCGGG
CGCTGGCGTTTGCCAACGACGGCGTCATCGAAGTGGCGGATCTGGGTCTGAAGGGCGGCCAGGGACGGCCGGCGGAAATG
CCTGACTTGGCCGATCACTACAGCGAGGCCGCAGCGGTTGCCGGCGTGCCCATGGCGACGAACCTGGAGTCGGCTGCGCC
CGGCGCGGCGGTACAATTGAATGGCGGCGAACTGCCGTCATCGTTGCCGGACTATCTTGACGATATCGAGCGCGACGTCA
TCCGGCAGGCGCTGACGCGCACGCATTTCAACCGCACCAAGGCCGCCGATCTGCTGGGCATCAGTTTTCGCCAGCTGCGC
TACCGGATGCAGCGATTGTCGATCCACGAGCAAGATTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (6-115)

• Sigma-54 interaction domain (Sigma54_activat) (146-312)

• Bacterial regulatory protein, Fis family (HTH_8) (446-486)

3D structure

• AlphaFold DB: A0A127PHP5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	52.245	99.593	0.52
pilR	Acinetobacter baumannii strain A118	44.172	99.39	0.439