Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   BC375_RS10905 Genome accession   NZ_CP016610
Coordinates   2253317..2254927 (-) Length   536 a.a.
NCBI ID   WP_046418460.1    Uniprot ID   -
Organism   Xylella fastidiosa strain Salento-2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2248317..2259927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC375_RS10885 (BC375_10200) pilA 2248617..2249054 (+) 438 WP_046418469.1 pilin Machinery gene
  BC375_RS10895 (BC375_10210) pilB 2249892..2251625 (+) 1734 WP_046418464.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BC375_RS10900 (BC375_10215) - 2251719..2253131 (-) 1413 WP_046418462.1 sigma-54 dependent transcriptional regulator -
  BC375_RS10905 (BC375_10220) pilS 2253317..2254927 (-) 1611 WP_046418460.1 ATP-binding protein Regulator
  BC375_RS10910 (BC375_10225) sucC 2255176..2256339 (+) 1164 WP_046418841.1 ADP-forming succinate--CoA ligase subunit beta -
  BC375_RS10915 (BC375_10230) sucD 2256368..2257240 (+) 873 WP_046418458.1 succinate--CoA ligase subunit alpha -
  BC375_RS13060 (BC375_10235) - 2257507..2258118 (+) 612 WP_230949970.1 hypothetical protein -

Sequence

Protein


Download         Length: 536 a.a.        Molecular weight: 59137.39 Da        Isoelectric Point: 6.0184

>NTDB_id=160764 BC375_RS10905 WP_046418460.1 2253317..2254927(-) (pilS) [Xylella fastidiosa strain Salento-2]
MLFSASLIHRIEFAPQRELYFLALYRILEAGLIAALVFSPVSILVDPESDPYLGTAVAVGYLLLATILLVWGRNERWFTP
LVFGSTVADILAATLAIHALPKASAGIAMMLLFNVAAAAILLRLRFSMILAWIAGVAMLVEYIWTVLSEGDSSRSLAELV
MFFTSYTAVAYMCHQAAQRARYSQALAEKRRAQIVNLAEINELIIRRMRTGVLVVDAANRIGLSNETAAALLGYDRQLVE
SDYDLATVAPELTMRLKCWRIGRHYEDTPLRLAPDQPEVQPRFVSLLADSGLTLIFLDDVSVVSRRAESLTLLALGRFSA
SLAHEIRNPLAAIKHASQLLEESSNLDKGDQRLLDIILKQCQRTNGIVESVLGLARRERANPENLDLVGFVSRFVDEYRQ
TLSSEYDNLEIQTLHSTVQALVDPRHLYQILAVLTHNALRYGRFPDTPAQVRIEVVYTGGSVGINVLDQGPGIPDAAVLQ
LFQPFFTTSDHGTGLGLYIARELCNANQSNLEYVAIPGSGACFRITLPGPYALIPN

Nucleotide


Download         Length: 1611 bp        

>NTDB_id=160764 BC375_RS10905 WP_046418460.1 2253317..2254927(-) (pilS) [Xylella fastidiosa strain Salento-2]
GTGTTGTTCAGCGCTTCGCTGATTCATCGGATCGAATTTGCCCCGCAGCGTGAACTTTATTTTCTCGCCTTGTATCGGAT
ATTGGAGGCTGGATTGATCGCGGCCTTGGTGTTCAGTCCGGTGTCGATATTGGTGGATCCTGAGAGTGATCCATATTTGG
GCACGGCTGTCGCTGTCGGTTATTTGCTGTTGGCTACCATTTTGTTGGTCTGGGGTCGTAATGAGCGCTGGTTCACTCCA
TTAGTCTTTGGAAGTACTGTCGCCGACATTTTGGCTGCCACTCTTGCTATTCACGCCCTGCCTAAAGCCAGTGCCGGCAT
TGCGATGATGTTGTTGTTTAACGTTGCCGCCGCCGCCATCTTATTGCGGTTGCGTTTCAGCATGATCCTGGCTTGGATTG
CTGGGGTTGCGATGCTTGTGGAATACATCTGGACGGTACTCAGTGAGGGTGACTCATCACGTTCACTGGCCGAGCTCGTT
ATGTTTTTCACCAGCTACACTGCAGTGGCGTATATGTGTCATCAGGCCGCGCAGCGGGCCAGATATAGCCAAGCTCTGGC
TGAAAAGCGCCGTGCCCAGATAGTCAACTTGGCAGAGATCAACGAGCTGATTATCCGACGTATGCGGACGGGTGTGTTGG
TGGTGGATGCTGCTAATCGAATCGGTTTGAGTAACGAAACTGCAGCTGCGTTGCTGGGATACGACAGACAATTGGTCGAG
AGTGATTACGATCTCGCTACGGTTGCTCCGGAGTTGACAATGCGTCTGAAGTGTTGGCGTATCGGTCGACACTACGAAGA
TACTCCGTTGCGATTAGCGCCTGATCAACCTGAGGTCCAGCCTCGCTTTGTGAGTCTGCTTGCCGACAGTGGATTGACAT
TAATTTTCCTTGATGATGTCAGTGTTGTTTCACGCCGTGCCGAATCGTTGACTTTGTTGGCGCTTGGACGTTTTTCAGCC
AGTTTGGCGCACGAGATTCGTAATCCTTTGGCTGCAATCAAACATGCATCGCAGCTGTTGGAAGAGTCCTCCAATCTTGA
CAAAGGCGATCAACGGCTGTTGGACATTATTCTAAAGCAGTGCCAGCGGACCAATGGGATTGTGGAGAGCGTGCTTGGTT
TGGCAAGACGCGAACGTGCTAACCCGGAAAATTTGGATTTGGTCGGTTTTGTGTCCCGATTTGTCGATGAATACCGCCAG
ACATTGTCAAGCGAGTATGACAATCTGGAGATACAAACGTTGCACAGTACCGTGCAGGCACTGGTGGATCCACGCCACTT
GTACCAGATCCTCGCTGTCCTTACCCACAACGCGTTGCGTTATGGCCGCTTTCCGGATACTCCGGCACAGGTGCGTATTG
AGGTGGTATATACCGGAGGCAGCGTGGGGATCAATGTCCTTGATCAGGGGCCTGGTATACCCGATGCGGCTGTTTTGCAG
CTTTTTCAGCCTTTTTTCACTACTTCCGACCATGGTACGGGGCTTGGTCTATATATCGCTCGTGAGCTGTGCAATGCGAA
TCAATCCAATCTTGAGTACGTGGCCATTCCAGGGAGCGGGGCTTGTTTCCGGATTACTTTGCCGGGTCCGTATGCATTGA
TTCCGAATTGA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(423-528)

His Kinase A (phospho-acceptor) domain (HisKA)

(314-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

37.452

98.134

0.368