Detailed information NTG0160740

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: BC375_RS07650
• Genome accession: NZ_CP016610
• Coordinates: 1540388..1542664 (-)
• Length: 758 a.a.
• NCBI ID: WP_046419495.1
• Uniprot ID: -
• Organism: Xylella fastidiosa strain Salento-2
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1535388..1547664

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BC375_RS07625 (BC375_07130)	trxB	1536807..1537772 (+)	966	WP_010893949.1	thioredoxin-disulfide reductase	-
BC375_RS07630 (BC375_07135)	-	1538138..1538977 (+)	840	Protein_1436	GNAT family N-acetyltransferase	-
BC375_RS07635 (BC375_07140)	aat	1538989..1539720 (+)	732	WP_010893947.1	leucyl/phenylalanyl-tRNA--protein transferase	-
BC375_RS07640 (BC375_07145)	infA	1539837..1540055 (+)	219	WP_010893946.1	translation initiation factor IF-1	-
BC375_RS07650 (BC375_07150)	clpC	1540388..1542664 (-)	2277	WP_046419495.1	ATP-dependent Clp protease ATP-binding subunit ClpA	Regulator
BC375_RS07655 (BC375_07155)	clpS	1542797..1543117 (-)	321	WP_010893943.1	ATP-dependent Clp protease adapter ClpS	-
BC375_RS07660 (BC375_07160)	-	1543291..1543749 (+)	459	WP_046419493.1	NUDIX hydrolase	-
BC375_RS07665 (BC375_07165)	mnmA	1543746..1544885 (+)	1140	WP_046419491.1	tRNA 2-thiouridine(34) synthase MnmA	-
BC375_RS07670 (BC375_07170)	hflD	1544882..1545496 (+)	615	WP_010893940.1	high frequency lysogenization protein HflD	-
BC375_RS07675 (BC375_07175)	-	1545605..1546372 (-)	768	WP_023906730.1	endonuclease/exonuclease/phosphatase family protein	-
BC375_RS07680 (BC375_07180)	-	1546388..1547170 (-)	783	WP_046419860.1	thiol:disulfide interchange protein DsbA/DsbL	-

Sequence

Protein

• Length: 758 a.a.
• Molecular weight: 83788.22 Da
• Isoelectric Point: 6.5943

>NTDB_id=160740 BC375_RS07650 WP_046419495.1 1540388..1542664(-) (clpC) [Xylella fastidiosa strain Salento-2]
MFSKDLEQTIGQCYKRTREACHEFMTVEHLLLSLLDNPLAHAVLKACGADVARLKRDLEQAIEVSITRLDADDGRDTQPT
LGFQRVLQRAVYHVQSSGKKEVTGANVLVAIFGEKDSHAVYFLNQQDISRLDIVNYLSHGITRMGDESDIGQAAENEAKG
DSEANKGDALAEYAINLNEHARNGRIDPLVGRKDEIERTIQVLCRRRKNNPLYVGEAGVGKTAIAEGLAKRIVDRSVPEV
LADAVIYSLDLGALVAGTKYRGDFEKRLKGVLSALRKTPNAVLFIDEIHTIIGAGSASGGTMDASNLIKPALASGELRCI
GSTTFQEYRGIFEKDRALARRFQKIDIVEPTAGEAFEILQGLKPKYEAHHGVTYADDALRAAVDLSVKHIGDRLLPDKAI
DVIDEAGARQRLLPEKERKELIDIEEIETIVTKMARVPAKQVSVSDKDVLKHLERNLKMVIFGQKPAIEMLSSAIKLARS
GLGNPDKPIGNFLLAGPTGVGKTEVTKQLAHHLGIELVRFDMSEYMEPHSVSRLIGAPPGYVGFDQGGLLTEKIVKTPHC
VLLLDEVEKAHMDVFNILLQVMDRGVLTDTNGREASFKNVILVMTTNAGASQSSRRTIGFTKQDHTSDAMEVICRSFSPE
FRNRLDAIVQFQPLGFSHILRVVDKFIIELEMLLQEKRVVLSATPIARDWLAQHGFDPLMGARPMARVIQEKIKRPLADE
LLFGKLLNGGRVGIDVRDNELIVETYSEPERLFPATVE

Nucleotide

• Length: 2277 bp

>NTDB_id=160740 BC375_RS07650 WP_046419495.1 1540388..1542664(-) (clpC) [Xylella fastidiosa strain Salento-2]
ATGTTCAGCAAAGATCTCGAGCAAACAATAGGTCAGTGCTACAAGCGAACGCGTGAGGCGTGTCATGAGTTCATGACCGT
TGAGCATCTGCTTCTTTCATTGTTGGATAATCCATTGGCGCACGCTGTGCTAAAGGCTTGCGGAGCGGATGTTGCCAGGC
TGAAGCGTGACCTTGAGCAGGCCATTGAGGTATCTATTACCCGCTTGGATGCCGATGACGGCCGTGATACTCAGCCGACG
CTTGGTTTCCAGCGAGTGCTGCAGCGTGCTGTTTACCATGTGCAGTCTTCTGGTAAGAAGGAGGTGACCGGCGCTAATGT
ACTGGTGGCTATCTTTGGTGAAAAGGATTCGCATGCCGTCTACTTTCTGAATCAGCAGGACATCAGCCGACTCGATATCG
TCAATTATTTATCGCACGGTATTACCCGTATGGGCGATGAGAGTGACATCGGGCAAGCTGCTGAGAATGAGGCCAAGGGG
GATAGTGAGGCGAATAAGGGGGATGCTCTTGCTGAATATGCTATTAACTTGAATGAACATGCACGGAATGGACGAATTGA
TCCATTGGTTGGGCGCAAAGATGAGATTGAACGTACGATCCAGGTGCTATGCCGACGTCGCAAGAATAACCCGCTCTATG
TAGGTGAAGCGGGCGTTGGTAAGACCGCAATCGCTGAGGGTTTGGCCAAGCGTATTGTTGATCGTAGTGTGCCGGAGGTG
CTTGCCGATGCGGTGATCTACTCGTTGGATCTTGGCGCTCTGGTGGCTGGTACCAAATATCGTGGTGACTTTGAAAAACG
TCTGAAGGGTGTGTTAAGCGCGTTGCGGAAAACCCCTAACGCAGTTTTGTTTATTGATGAAATCCACACCATCATCGGCG
CTGGTTCCGCTTCGGGTGGCACGATGGATGCGTCTAATTTGATCAAGCCAGCTTTAGCTTCAGGTGAGTTACGTTGCATT
GGTTCGACCACGTTTCAAGAGTATCGCGGCATCTTCGAAAAGGACCGTGCTTTGGCGAGGCGTTTTCAGAAGATCGATAT
CGTCGAGCCCACCGCGGGCGAGGCTTTCGAGATTCTACAAGGACTCAAGCCTAAGTATGAGGCACATCACGGCGTTACCT
ATGCTGATGACGCATTGCGCGCTGCGGTTGATTTATCGGTCAAGCACATCGGTGATCGGTTGTTGCCGGATAAGGCGATT
GATGTGATAGATGAGGCAGGCGCGCGTCAGCGTTTGTTGCCGGAGAAAGAACGCAAAGAGCTGATCGATATTGAGGAGAT
TGAGACCATTGTTACGAAGATGGCTAGGGTCCCGGCGAAGCAGGTGAGTGTGAGCGATAAGGACGTTTTGAAGCACCTCG
AACGCAATTTGAAGATGGTGATCTTTGGTCAGAAGCCAGCGATTGAGATGCTGTCGTCGGCAATTAAGTTGGCGCGCAGT
GGCCTAGGCAATCCGGATAAGCCGATTGGCAACTTCCTGCTTGCTGGCCCAACCGGGGTTGGTAAAACTGAGGTGACTAA
ACAATTAGCACACCATCTTGGGATCGAGTTGGTACGTTTTGACATGTCTGAGTACATGGAGCCGCATTCGGTGAGTCGTC
TGATTGGCGCGCCTCCGGGCTATGTTGGTTTTGATCAGGGAGGCTTGCTGACCGAGAAGATCGTCAAGACTCCACACTGC
GTTCTGTTGTTGGACGAGGTGGAGAAAGCGCATATGGATGTTTTCAATATTCTCCTACAAGTCATGGATCGCGGTGTGTT
AACGGATACCAATGGACGTGAGGCGAGTTTTAAAAATGTGATTCTAGTAATGACGACCAATGCAGGTGCGTCCCAATCTT
CACGGCGTACGATTGGTTTCACTAAGCAGGACCATACCAGCGATGCGATGGAAGTGATTTGTCGCAGTTTCAGCCCTGAG
TTCCGCAATCGTCTTGATGCGATTGTGCAGTTCCAGCCCCTGGGTTTCAGTCACATTCTGCGGGTTGTCGACAAGTTCAT
CATTGAGTTGGAGATGTTACTTCAAGAGAAACGTGTTGTTTTGTCGGCTACGCCGATTGCTCGCGACTGGCTGGCTCAGC
ATGGTTTTGATCCGCTGATGGGTGCTCGTCCGATGGCACGTGTGATTCAAGAGAAAATCAAACGCCCACTCGCAGACGAA
TTGTTGTTTGGTAAGTTGCTCAACGGTGGTCGGGTCGGCATTGATGTGCGTGACAATGAGTTAATTGTTGAGACTTATTC
GGAACCAGAGCGGTTGTTTCCGGCGACCGTGGAGTAA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (353-454)

• ATPase family associated with various cellular activities (AAA) (AAA) (212-310)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-62)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (654-732)

• AAA domain (Cdc48 subfamily) (AAA_2) (487-648)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	39.825	100	0.421
clpC	Streptococcus pneumoniae TIGR4	37.701	100	0.402
clpC	Streptococcus pneumoniae Rx1	37.252	100	0.397
clpC	Streptococcus pneumoniae D39	37.252	100	0.397
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	36.667	100	0.392
clpC	Streptococcus thermophilus LMG 18311	37.595	100	0.392
clpA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	39.918	96.174	0.384