Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   BBH51_RS08910 Genome accession   NZ_CP016553
Coordinates   1839100..1839843 (-) Length   247 a.a.
NCBI ID   WP_005549806.1    Uniprot ID   A0A5D0EJL7
Organism   Aggregatibacter actinomycetemcomitans strain IDH781     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1834100..1844843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBH51_RS08890 (BBH51_08890) rimI 1834251..1834694 (+) 444 WP_005537944.1 ribosomal protein S18-alanine N-acetyltransferase -
  BBH51_RS08895 (BBH51_08895) recC 1834696..1838085 (-) 3390 WP_005537947.1 exodeoxyribonuclease V subunit gamma -
  BBH51_RS08900 (BBH51_08900) comQ 1838131..1838433 (-) 303 WP_005554585.1 DUF5374 domain-containing protein Machinery gene
  BBH51_RS08905 (BBH51_08905) comP 1838408..1839103 (-) 696 WP_005537951.1 DUF2572 family protein Machinery gene
  BBH51_RS08910 (BBH51_08910) comO 1839100..1839843 (-) 744 WP_005549806.1 PulJ/GspJ family protein Machinery gene
  BBH51_RS08915 (BBH51_08915) comN 1839830..1840351 (-) 522 WP_005562086.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BBH51_RS08935 (BBH51_08935) pal 1841056..1841523 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  BBH51_RS08940 (BBH51_08940) tolB 1841538..1842818 (-) 1281 WP_005544509.1 Tol-Pal system beta propeller repeat protein TolB -
  BBH51_RS08945 (BBH51_08945) tolA 1842853..1844001 (-) 1149 WP_005549166.1 cell envelope integrity protein TolA -
  BBH51_RS08950 (BBH51_08950) tolR 1844018..1844440 (-) 423 WP_005542289.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28579.58 Da        Isoelectric Point: 7.9878

>NTDB_id=160703 BBH51_RS08910 WP_005549806.1 1839100..1839843(-) (comO) [Aggregatibacter actinomycetemcomitans strain IDH781]
MMKNRAFFHVSPYHGQSLVALMISVALSSFLFLVIMQFYSQHQQQNREMLLRLQLQMELQRVIQLMGKDLARSGFRAVNN
KLKQNNIALFEQENTPSAVTIAQVNGEKNNSCVLFFYDLDANGCIGGNYKGDACVVNGRNNTREIERELFGYRLHQNMLE
TRLTYKNAVKQNCSQDECRRYTQQSACHHGGWADLLDEKEYEISQLSFDWLSEQKGIEIRLSGRFKHHKQIEYETSMIVP
LLNGAKE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=160703 BBH51_RS08910 WP_005549806.1 1839100..1839843(-) (comO) [Aggregatibacter actinomycetemcomitans strain IDH781]
ATGATGAAGAATAGAGCGTTTTTCCACGTGTCGCCTTATCACGGGCAAAGCCTTGTTGCGCTGATGATTTCCGTGGCGCT
TTCGAGCTTTTTATTTCTCGTCATCATGCAGTTTTATAGCCAACATCAGCAACAAAATCGGGAAATGTTACTGCGTTTGC
AGTTACAAATGGAATTACAACGCGTCATTCAATTAATGGGGAAAGATTTGGCAAGAAGTGGTTTTCGTGCCGTAAATAAT
AAATTAAAACAAAATAATATCGCCTTATTCGAGCAAGAAAATACACCATCGGCAGTGACCATCGCGCAAGTGAATGGTGA
GAAAAATAACAGCTGCGTGTTGTTCTTTTATGACTTGGATGCCAATGGGTGTATCGGCGGAAATTATAAAGGCGATGCTT
GTGTTGTGAACGGGCGTAACAATACAAGAGAAATTGAGCGCGAATTATTCGGTTATCGACTTCATCAAAATATGCTGGAA
ACGCGTTTGACTTACAAAAATGCGGTGAAGCAAAACTGCTCCCAAGACGAGTGCCGCCGCTATACACAACAATCCGCGTG
TCATCACGGTGGTTGGGCAGATTTACTGGACGAGAAAGAATATGAAATTTCGCAGTTGAGTTTTGATTGGCTATCGGAAC
AAAAGGGGATTGAAATTCGCCTCAGTGGACGTTTTAAACACCATAAACAGATCGAATATGAAACTTCCATGATCGTGCCT
TTATTGAACGGAGCCAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D0EJL7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

51.442

84.211

0.433