Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   HSISS4_RS03505 Genome accession   NZ_CP013216
Coordinates   706126..706419 (+) Length   97 a.a.
NCBI ID   WP_021144391.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 701126..711419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS03480 (HSISS4_00654) - 701261..702403 (+) 1143 WP_021144396.1 AbiH family protein -
  HSISS4_RS03485 (HSISS4_00655) - 702570..703277 (+) 708 WP_021144395.1 hypothetical protein -
  HSISS4_RS03490 (HSISS4_00656) - 703475..704629 (+) 1155 WP_049545955.1 restriction endonuclease subunit S -
  HSISS4_RS03495 (HSISS4_00657) - 704645..705547 (+) 903 Protein_654 HAD family hydrolase -
  HSISS4_RS03500 (HSISS4_00658) - 705771..706136 (+) 366 WP_021152058.1 type II toxin-antitoxin system RelE/ParE family toxin -
  HSISS4_RS03505 (HSISS4_00659) HI0659 706126..706419 (+) 294 WP_021144391.1 helix-turn-helix domain-containing protein Machinery gene
  HSISS4_RS03510 (HSISS4_00660) - 706441..708042 (+) 1602 WP_021147022.1 type I restriction-modification system subunit M -
  HSISS4_RS03515 (HSISS4_00661) - 708121..709056 (+) 936 WP_021147021.1 Rpn family recombination-promoting nuclease/putative transposase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10730.48 Da        Isoelectric Point: 5.8962

>NTDB_id=160702 HSISS4_RS03505 WP_021144391.1 706126..706419(+) (HI0659) [Streptococcus salivarius strain HSISS4]
MKNSAIGSNWKDVRAELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKV

Nucleotide


Download         Length: 294 bp        

>NTDB_id=160702 HSISS4_RS03505 WP_021144391.1 706126..706419(+) (HI0659) [Streptococcus salivarius strain HSISS4]
ATGAAGAATAGTGCCATCGGCAGCAATTGGAAAGATGTGAGAGCAGAGCTCTTCACCAAGGAAGAAATCCTTGAAAGTGA
TCTTCGGGTCGCGATTATGACAGAGCTGATTGAGGCTCGGCATGAAAAGGGCATTAGTCAAAAGAAACTAGAAGAACTCA
GTGGGGTTAGCCAACCGGTCATCGCTCGGATGGAGACAGGGAAGACCAGTCCTCAATTGGATACGGTTTTGAAAGTCTTA
GCCAGTCTGGGCAAGACCCTCGCTGTCGTCCCACTGGAACAAGAAAAAGTCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

93.814

0.567

Multiple sequence alignment