Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   BBH51_RS05350 Genome accession   NZ_CP016553
Coordinates   1075575..1076195 (+) Length   206 a.a.
NCBI ID   WP_196756012.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain IDH781     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1070575..1081195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBH51_RS05310 (BBH51_05310) mutM 1070610..1071425 (-) 816 WP_005554465.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  BBH51_RS05315 (BBH51_05315) rpmG 1071507..1071677 (-) 171 WP_005542835.1 50S ribosomal protein L33 -
  BBH51_RS05320 (BBH51_05320) rpmB 1071689..1071925 (-) 237 WP_005542826.1 50S ribosomal protein L28 -
  BBH51_RS05325 (BBH51_05325) radC 1072112..1072771 (-) 660 WP_005549324.1 RadC family protein Machinery gene
  BBH51_RS05330 (BBH51_05330) coaBC 1072949..1074148 (+) 1200 WP_005540229.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BBH51_RS05335 (BBH51_05335) dut 1074217..1074672 (+) 456 WP_005540230.1 dUTP diphosphatase -
  BBH51_RS05340 (BBH51_05340) slmA 1074672..1075271 (+) 600 WP_005540234.1 nucleoid occlusion factor SlmA -
  BBH51_RS05345 (BBH51_05345) - 1075295..1075513 (+) 219 WP_005540236.1 YheU family protein -
  BBH51_RS05350 (BBH51_05350) crp 1075575..1076195 (+) 621 WP_196756012.1 cAMP-activated global transcriptional regulator CRP Regulator
  BBH51_RS05355 (BBH51_05355) gorA 1076328..1077698 (-) 1371 WP_005540240.1 glutathione-disulfide reductase -
  BBH51_RS05360 (BBH51_05360) - 1077793..1078638 (-) 846 WP_005540242.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23375.02 Da        Isoelectric Point: 7.8328

>NTDB_id=160692 BBH51_RS05350 WP_196756012.1 1075575..1076195(+) (crp) [Aggregatibacter actinomycetemcomitans strain IDH781]
MQSMDPTLEWFLSHCHIHKYPSKSTLINAGEKAETLYYLIQGSVSVLVKDEDGKEMILTYLSQGDFFGEAGLFEEGQRRS
AWIKAKSSCEVAEISYRKFRQLIQVNPEILMYLTAQLAYRLQNTSRQVSNLAFLDVTGRIAQTLLNLAKMPEAMTHPDGM
QIKITRQEIGQMVGCSRETVGRILKMLEDQHLISAHGKTIIVYGTR

Nucleotide


Download         Length: 621 bp        

>NTDB_id=160692 BBH51_RS05350 WP_196756012.1 1075575..1076195(+) (crp) [Aggregatibacter actinomycetemcomitans strain IDH781]
ATGCAATCAATGGATCCGACACTTGAGTGGTTTTTATCCCACTGCCATATCCATAAATATCCGTCTAAAAGCACATTAAT
CAACGCCGGCGAAAAAGCCGAGACACTTTATTATTTAATTCAAGGCTCCGTGTCCGTTTTGGTCAAAGATGAAGACGGCA
AAGAAATGATCCTCACCTACTTAAGCCAAGGGGATTTTTTCGGCGAAGCGGGCTTATTTGAAGAAGGACAACGTCGTTCT
GCGTGGATTAAAGCAAAATCCTCCTGTGAAGTGGCGGAAATTTCTTATCGTAAATTTCGCCAGCTGATTCAAGTCAACCC
TGAAATTCTGATGTATCTTACGGCCCAGTTAGCGTATCGGTTACAAAACACTTCGCGCCAAGTAAGTAATTTAGCCTTTT
TAGATGTCACCGGTCGCATCGCGCAAACCTTGCTCAATCTGGCAAAAATGCCGGAAGCGATGACTCACCCGGACGGTATG
CAAATTAAAATCACCCGCCAGGAAATCGGACAAATGGTCGGTTGTTCGCGGGAAACCGTCGGGCGTATTCTGAAAATGCT
GGAAGATCAACACCTCATCTCGGCACACGGCAAAACCATCATAGTTTACGGCACCCGCTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(19-105)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(138-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

81.683

98.058

0.801
  crp Haemophilus influenzae Rd KW20

80.198

98.058

0.786
  crp Acinetobacter baumannii D1279779

47.236

96.602

0.456

Multiple sequence alignment