Detailed information NTG0160691

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: BBH51_RS05325
• Genome accession: NZ_CP016553
• Coordinates: 1072112..1072771 (-)
• Length: 219 a.a.
• NCBI ID: WP_005549324.1
• Uniprot ID: A0A5D0ENL5
• Organism: Aggregatibacter actinomycetemcomitans strain IDH781
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1067112..1077771

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BBH51_RS05290 (BBH51_05290)	rpmE	1067555..1067767 (+)	213	WP_005542845.1	50S ribosomal protein L31	-
BBH51_RS05295 (BBH51_05295)	-	1067830..1068522 (+)	693	WP_005542843.1	glycosyltransferase family 25 protein	-
BBH51_RS05300 (BBH51_05300)	-	1068523..1069545 (+)	1023	WP_005542841.1	glycosyltransferase family 9 protein	-
BBH51_RS05305 (BBH51_05305)	-	1069555..1070607 (+)	1053	WP_005542839.1	glycosyltransferase family 9 protein	-
BBH51_RS05310 (BBH51_05310)	mutM	1070610..1071425 (-)	816	WP_005554465.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
BBH51_RS05315 (BBH51_05315)	rpmG	1071507..1071677 (-)	171	WP_005542835.1	50S ribosomal protein L33	-
BBH51_RS05320 (BBH51_05320)	rpmB	1071689..1071925 (-)	237	WP_005542826.1	50S ribosomal protein L28	-
BBH51_RS05325 (BBH51_05325)	radC	1072112..1072771 (-)	660	WP_005549324.1	RadC family protein	Machinery gene
BBH51_RS05330 (BBH51_05330)	coaBC	1072949..1074148 (+)	1200	WP_005540229.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
BBH51_RS05335 (BBH51_05335)	dut	1074217..1074672 (+)	456	WP_005540230.1	dUTP diphosphatase	-
BBH51_RS05340 (BBH51_05340)	slmA	1074672..1075271 (+)	600	WP_005540234.1	nucleoid occlusion factor SlmA	-
BBH51_RS05345 (BBH51_05345)	-	1075295..1075513 (+)	219	WP_005540236.1	YheU family protein	-
BBH51_RS05350 (BBH51_05350)	crp	1075575..1076195 (+)	621	WP_196756012.1	cAMP-activated global transcriptional regulator CRP	Regulator
BBH51_RS05355 (BBH51_05355)	gorA	1076328..1077698 (-)	1371	WP_005540240.1	glutathione-disulfide reductase	-

Sequence

Protein

• Length: 219 a.a.
• Molecular weight: 24858.97 Da
• Isoelectric Point: 7.0207

>NTDB_id=160691 BBH51_RS05325 WP_005549324.1 1072112..1072771(-) (radC) [Aggregatibacter actinomycetemcomitans strain IDH781]
MNEALMPREKLLKYGAAALTDDELLAIFLRTGIKDCPVMQLSKNVLQHFGSLRELISANQKQFCAVKGIGITQFIQLQAC
TEMTRRYLFAELKETHCFTSPDIVKMYLQTELANTEREIFMVLFLDNQHRLIKQERLFLGTINKAMVYPREIIKEALACN
AAAIILAHNHPSGVAEPSISDKQITDTIRQAADLVDIRVLDHFVIGNGRYFSFAEQNLL

Nucleotide

• Length: 660 bp

>NTDB_id=160691 BBH51_RS05325 WP_005549324.1 1072112..1072771(-) (radC) [Aggregatibacter actinomycetemcomitans strain IDH781]
ATGAATGAAGCATTAATGCCAAGGGAAAAGCTATTAAAATACGGTGCTGCCGCTTTGACGGACGATGAACTATTGGCGAT
CTTTTTGCGTACGGGAATTAAGGACTGCCCGGTGATGCAGTTATCGAAAAATGTGCTACAACATTTCGGTTCGTTACGTG
AATTGATTAGCGCCAATCAAAAGCAGTTTTGCGCCGTGAAAGGCATTGGTATTACGCAATTTATTCAGCTGCAAGCTTGC
ACCGAAATGACCCGCCGTTATTTGTTTGCAGAATTAAAAGAGACCCACTGTTTTACCTCTCCCGACATTGTGAAAATGTA
TTTGCAGACGGAACTGGCAAATACCGAGCGGGAAATTTTTATGGTGCTTTTTCTGGATAATCAACATCGTTTGATTAAGC
AGGAACGCCTGTTTCTCGGCACAATTAATAAAGCGATGGTGTATCCGCGTGAAATCATTAAAGAAGCCTTGGCTTGTAAT
GCGGCGGCGATTATTTTGGCGCATAATCACCCTTCCGGCGTGGCGGAGCCGAGCATTTCCGATAAACAAATTACCGATAC
TATCAGACAGGCGGCGGATTTGGTGGATATTCGCGTGCTGGATCATTTCGTGATCGGCAATGGACGTTATTTTTCCTTTG
CGGAACAAAATCTTCTTTAA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (3-72)

• RadC-like JAB domain (RadC) (98-217)

3D structure

• AlphaFold DB: A0A5D0ENL5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	67.89	99.543	0.676