Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SA40TW_RS04890 Genome accession   NZ_CP013182
Coordinates   962745..963731 (+) Length   328 a.a.
NCBI ID   WP_000959298.1    Uniprot ID   A0A6A9GY92
Organism   Staphylococcus aureus strain SA40TW     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 957745..968731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA40TW_RS04870 (SA40TW_04630) - 958184..959829 (+) 1646 Protein_891 IS1182-like element ISSau3 family transposase -
  SA40TW_RS04875 (SA40TW_04635) trpS 959855..960844 (-) 990 WP_000448937.1 tryptophan--tRNA ligase -
  SA40TW_RS04880 (SA40TW_04640) spxA 961139..961534 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  SA40TW_RS04885 (SA40TW_04645) mecA 961905..962624 (+) 720 WP_001217728.1 adaptor protein MecA -
  SA40TW_RS04890 (SA40TW_04650) coiA 962745..963731 (+) 987 WP_000959298.1 competence protein CoiA Machinery gene
  SA40TW_RS04895 (SA40TW_04655) pepF 963779..965587 (+) 1809 WP_021758235.1 oligoendopeptidase F -
  SA40TW_RS04900 (SA40TW_04660) yjbH 966047..966853 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  SA40TW_RS04905 (SA40TW_04665) - 966876..967241 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  SA40TW_RS04910 (SA40TW_04670) - 967345..967938 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  SA40TW_RS04915 (SA40TW_04675) - 968124..968471 (+) 348 WP_001242107.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38745.27 Da        Isoelectric Point: 9.6529

>NTDB_id=160389 SA40TW_RS04890 WP_000959298.1 962745..963731(+) (coiA) [Staphylococcus aureus strain SA40TW]
MLVALNGEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLESDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=160389 SA40TW_RS04890 WP_000959298.1 962745..963731(+) (coiA) [Staphylococcus aureus strain SA40TW]
ATGTTAGTAGCTTTAAATGGAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGAAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(10-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A9GY92

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.646

100

0.966
  coiA Staphylococcus aureus N315

96.646

100

0.966

Multiple sequence alignment