Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   A4W81_RS06585 Genome accession   NZ_CP016465
Coordinates   1287806..1288420 (+) Length   204 a.a.
NCBI ID   WP_011374972.1    Uniprot ID   Q38W54
Organism   Latilactobacillus sakei strain TMW 1.3     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1282806..1293420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W81_RS06565 (A4W81_06430) - 1283439..1285229 (-) 1791 WP_016265354.1 ABC transporter ATP-binding protein -
  A4W81_RS06570 (A4W81_06435) - 1285231..1286976 (-) 1746 WP_056947092.1 ABC transporter transmembrane domain-containing protein -
  A4W81_RS06575 (A4W81_06440) - 1287118..1287348 (-) 231 WP_011374970.1 YneF family protein -
  A4W81_RS06580 (A4W81_06445) - 1287429..1287671 (-) 243 WP_016265356.1 DUF896 domain-containing protein -
  A4W81_RS06585 (A4W81_06450) dinR/lexA 1287806..1288420 (+) 615 WP_011374972.1 transcriptional repressor LexA Regulator
  A4W81_RS06590 (A4W81_06455) - 1288590..1289108 (-) 519 WP_011374973.1 adenine phosphoribosyltransferase -
  A4W81_RS06595 (A4W81_06460) recJ 1289132..1291444 (-) 2313 WP_076632066.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  A4W81_RS06600 (A4W81_06465) galE 1291588..1292578 (+) 991 Protein_1283 UDP-glucose 4-epimerase GalE -
  A4W81_RS06605 (A4W81_06470) - 1292664..1293029 (+) 366 WP_011374976.1 DUF1304 domain-containing protein -
  A4W81_RS06610 (A4W81_06475) - 1293046..1293372 (+) 327 WP_011374977.1 heavy metal-binding domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22567.96 Da        Isoelectric Point: 4.9705

>NTDB_id=160366 A4W81_RS06585 WP_011374972.1 1287806..1288420(+) (dinR/lexA) [Latilactobacillus sakei strain TMW 1.3]
MTKTESKQLEVLRFIHERVQDKGYPPTVREICEAVNLSSTSTVHGHLARLEKKGLLQKDPTKPRAIELTPAGLTAIGATP
QKIPVLGVVTAGVPILAVEEATDYFPLPPSLQTEQDLFMLTIRGESMINAGILDGDEVIIRKQSTADNGDIVIAMTAEDE
ATCKRFFKEADHYRLQPENDTFEPIILNEVSILGKVVGLYRDRM

Nucleotide


Download         Length: 615 bp        

>NTDB_id=160366 A4W81_RS06585 WP_011374972.1 1287806..1288420(+) (dinR/lexA) [Latilactobacillus sakei strain TMW 1.3]
ATGACTAAAACTGAATCCAAACAATTAGAGGTCTTACGTTTTATTCACGAACGTGTTCAAGACAAAGGTTACCCACCAAC
GGTCCGCGAGATTTGCGAAGCCGTTAATTTATCGTCCACTTCTACTGTCCATGGCCATTTAGCCCGACTTGAGAAGAAGG
GCTTATTACAAAAGGATCCCACTAAACCACGGGCGATCGAGTTAACGCCCGCTGGCCTAACGGCAATTGGGGCAACACCC
CAGAAAATCCCAGTATTAGGGGTGGTTACCGCCGGTGTGCCTATCTTAGCAGTTGAAGAAGCAACTGATTACTTCCCGCT
TCCACCTAGTTTGCAAACCGAACAAGATTTGTTCATGCTAACAATTCGTGGTGAAAGTATGATTAATGCCGGTATCTTAG
ATGGCGACGAAGTTATCATTCGCAAGCAATCAACCGCCGATAATGGCGATATTGTCATTGCGATGACTGCCGAAGATGAA
GCAACCTGCAAACGGTTCTTCAAAGAAGCAGATCACTATCGTCTCCAACCAGAAAACGATACGTTTGAACCAATCATTTT
AAATGAAGTCAGCATTCTAGGGAAGGTCGTTGGCCTTTACCGCGATCGCATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(3-65)

Peptidase S24-like (Peptidase_S24)

(84-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38W54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

59.901

99.02

0.593