Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   A4W81_RS05490 Genome accession   NZ_CP016465
Coordinates   1080326..1082104 (-) Length   592 a.a.
NCBI ID   WP_099713195.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1075326..1087104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W81_RS05475 (A4W81_05375) - 1077600..1078439 (-) 840 WP_056946665.1 YitT family protein -
  A4W81_RS05480 (A4W81_05380) - 1078570..1079598 (-) 1029 WP_056946668.1 aldehyde reductase -
  A4W81_RS05485 (A4W81_05385) - 1079711..1080292 (+) 582 WP_011374754.1 TetR/AcrR family transcriptional regulator -
  A4W81_RS05490 (A4W81_05390) uvrC 1080326..1082104 (-) 1779 WP_099713195.1 excinuclease ABC subunit UvrC Machinery gene
  A4W81_RS05495 (A4W81_05395) - 1082184..1082915 (-) 732 WP_056946671.1 amino acid ABC transporter ATP-binding protein -
  A4W81_RS05500 (A4W81_05400) - 1082908..1084371 (-) 1464 WP_076632414.1 ABC transporter substrate-binding protein/permease -
  A4W81_RS05505 - 1084506..1084658 (+) 153 WP_011374758.1 SPJ_0845 family protein -
  A4W81_RS05510 (A4W81_05405) - 1084733..1085026 (-) 294 WP_011374759.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  A4W81_RS05515 (A4W81_05410) yihA 1085026..1085625 (-) 600 WP_076632415.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  A4W81_RS05520 (A4W81_05415) clpX 1085773..1087026 (-) 1254 WP_011374761.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 67764.32 Da        Isoelectric Point: 9.6587

>NTDB_id=160353 A4W81_RS05490 WP_099713195.1 1080326..1082104(-) (uvrC) [Latilactobacillus sakei strain TMW 1.3]
MASEHIEHKLALLPALPGCYLMKDVNAQIIYVGKAKNLKNRVRSYFKSSHEGKTAKLVSEIVDFETIITSTNKEAFLLEI
TLIQKHQPYFNIKLKRGTGYPYIKITNERDPRLLITGDVKKDGGYYFGPYPDVYAAQETLRFLQRVYPLRRCQGHQGRPC
LYYHMGQCLGACFQEVPEAAYTEQIKKIKRFLNGQVDNVKKDLTEKMATAAQEMQFERAAELRDQLRYIEATVEKQKIIS
NDHTPRDLFAFYMDKGWLSIQIFFIRQARLIRREKRLFPCVNTPEEELATFILQWYNRKNNVLPREILVPDGIEKQVLSD
ILQVPIRTPQRGEKKALMEMAQKNSRLVLEEKFRLLELDNRKTVGAQDEIMDALGLPHGHVIEAFDHSHIQGTDPVSAMV
TFVDGRAEKKLYRKYKLTQTAERAGANEDANTREVIYRRYSRLLKEGKALPDLILMDGGVVELNAAKDVLENELGLTIPV
AGMVKDNHHKTASLLFGEADQTIQLDPKSQGFYLLTRIQDEVHRFAISFHRQLRGKNSLSSKLDDIKGVGPKTRTKLLKN
FGSMKHIKDASVEELEALGISKTVAQTIKLSL

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=160353 A4W81_RS05490 WP_099713195.1 1080326..1082104(-) (uvrC) [Latilactobacillus sakei strain TMW 1.3]
TTGGCAAGTGAACATATCGAACATAAATTAGCCTTATTACCAGCCTTACCAGGCTGTTATTTGATGAAAGATGTTAACGC
ACAGATTATCTACGTGGGGAAGGCCAAGAATCTTAAGAACCGGGTCCGCTCGTATTTTAAGAGTAGCCACGAAGGTAAGA
CGGCCAAATTGGTCTCTGAAATTGTCGATTTTGAAACAATCATTACATCGACAAATAAAGAGGCCTTTTTGTTGGAAATT
ACGTTAATCCAAAAGCACCAACCCTACTTTAATATCAAGTTAAAACGGGGGACGGGCTATCCGTACATCAAGATCACCAA
TGAACGTGATCCGCGCTTATTGATTACTGGCGATGTCAAAAAAGATGGTGGCTATTATTTTGGCCCGTATCCGGACGTTT
ATGCGGCTCAGGAGACTTTACGCTTCTTGCAACGTGTTTACCCCTTGCGGCGCTGTCAGGGTCATCAAGGACGTCCTTGT
TTGTACTATCATATGGGGCAGTGCTTGGGGGCTTGCTTCCAAGAAGTACCAGAAGCAGCCTATACCGAACAGATTAAGAA
AATTAAACGATTTTTAAATGGGCAAGTCGACAATGTTAAGAAGGATTTAACGGAGAAAATGGCGACGGCTGCCCAGGAGA
TGCAATTTGAGCGGGCCGCTGAGTTGCGTGATCAATTACGCTATATTGAAGCAACCGTTGAAAAACAAAAGATTATTTCT
AACGATCATACACCGCGTGATTTATTTGCCTTTTACATGGATAAAGGCTGGTTGTCGATTCAAATCTTCTTTATTCGCCA
AGCACGTTTAATTCGGCGGGAAAAACGTCTCTTCCCATGTGTGAATACGCCGGAAGAAGAATTGGCGACCTTTATTCTCC
AGTGGTATAACCGTAAGAATAATGTGTTACCACGGGAAATTCTCGTGCCAGATGGGATCGAAAAGCAAGTCTTATCCGAT
ATTTTGCAAGTACCAATTCGAACGCCACAACGGGGAGAGAAAAAAGCCTTGATGGAAATGGCGCAAAAAAATAGCCGTCT
GGTATTAGAAGAAAAGTTCCGCTTATTGGAACTCGATAATCGCAAGACGGTTGGTGCGCAAGATGAAATTATGGATGCAC
TCGGCTTACCCCATGGTCATGTTATCGAAGCATTCGATCATTCGCATATTCAAGGGACCGATCCGGTGTCGGCGATGGTC
ACATTTGTTGATGGCCGCGCTGAGAAGAAGCTTTATCGGAAGTATAAATTAACCCAGACGGCAGAGCGCGCCGGCGCCAA
CGAAGATGCCAATACGCGCGAGGTGATCTATCGCCGTTATTCACGCTTGCTAAAAGAGGGCAAAGCGCTGCCTGACTTAA
TTTTAATGGATGGTGGGGTAGTTGAACTCAATGCCGCCAAAGACGTCTTAGAAAACGAACTAGGGCTCACAATTCCAGTT
GCGGGGATGGTTAAGGATAATCACCATAAAACAGCTTCGTTATTATTTGGTGAAGCCGATCAAACGATTCAGCTTGATCC
TAAGAGTCAGGGCTTTTACTTATTGACGCGAATTCAAGATGAAGTCCATCGCTTTGCGATTAGTTTTCACCGCCAGTTAC
GTGGTAAGAATTCGTTGAGTTCTAAGTTAGATGATATCAAGGGGGTTGGTCCGAAAACGCGGACGAAACTCTTGAAGAAT
TTTGGCTCGATGAAGCATATTAAAGATGCGTCTGTTGAAGAACTTGAAGCACTCGGAATATCGAAGACAGTTGCGCAAAC
CATTAAATTATCACTATAG

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(18-88)

UvrB/uvrC motif (UVR)

(197-231)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-527)

Helix-hairpin-helix domain (HHH_5)

(542-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

50.767

99.155

0.503
  uvrC Streptococcus pneumoniae R6

50.426

99.155

0.5
  uvrC Streptococcus pneumoniae D39

50.426

99.155

0.5

Multiple sequence alignment