Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   A4W81_RS03705 Genome accession   NZ_CP016465
Coordinates   728632..730680 (+) Length   682 a.a.
NCBI ID   WP_112221113.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 723632..735680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W81_RS03680 (A4W81_03640) rpe 724076..724738 (+) 663 WP_011374403.1 ribulose-phosphate 3-epimerase -
  A4W81_RS03685 (A4W81_03645) - 724725..725375 (+) 651 WP_011374404.1 thiamine diphosphokinase -
  A4W81_RS03690 (A4W81_03650) rpmB 725728..725913 (-) 186 WP_004265581.1 50S ribosomal protein L28 -
  A4W81_RS03695 (A4W81_03655) - 726216..726578 (+) 363 WP_011374405.1 Asp23/Gls24 family envelope stress response protein -
  A4W81_RS03700 (A4W81_03660) - 726642..728312 (+) 1671 WP_112220968.1 DAK2 domain-containing protein -
  A4W81_RS03705 (A4W81_03665) recG/mmsA 728632..730680 (+) 2049 WP_112221113.1 ATP-dependent DNA helicase RecG Machinery gene
  A4W81_RS03710 (A4W81_03670) plsX 730700..731713 (+) 1014 WP_056948342.1 phosphate acyltransferase PlsX -
  A4W81_RS03715 (A4W81_03675) acpP 731860..732102 (+) 243 WP_011374409.1 acyl carrier protein -
  A4W81_RS03720 (A4W81_03680) - 732575..734221 (+) 1647 WP_112220969.1 peptide ABC transporter substrate-binding protein -
  A4W81_RS03725 (A4W81_03685) opp3b 734291..735226 (+) 936 WP_011374411.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 75957.42 Da        Isoelectric Point: 6.9393

>NTDB_id=160340 A4W81_RS03705 WP_112221113.1 728632..730680(+) (recG/mmsA) [Latilactobacillus sakei strain TMW 1.3]
MSVLSLTDSVTVLTGVGPKRLTALNQLGIATISDLLYYFPFRYEDLKVKDLSEAVDQEKVTLKGTVVADPVVSRWGPGKT
RLNVRLLINHDVIMVTFFNQPYLKDKFEAGVDIAVYGKWDARRNSLTGMKVLAVQSADNPSFAAIYSTNKNVRQGTLVKL
IREAFDNYQSVIPDLIPADIRERYKLVSEVALIAGMHFPESYPEAKQARRTAIFHEFFLYQLQLQAIKQADRHVENGLAL
PYQNAALKEFIKTLPFDLTDAQKRVVNEICLDLKAPAHMNRLLQGDVGSGKTIVAAIAMFAAVTAGFQAALMVPTEILAE
QHYQSLQNLYAPMNVTVGLLTGSTTTKERRTLLADIESGRINIIVGTHALIQDAVVYHKLGFAVIDEQHRFGVNQRRVLR
EKGLQPDMLAMTATPIPRTLAITAYGEMDVSTIDELPKGRIPIETSWVRSNQVEQALSFVQKQLADNSQVFAITPLIAES
EQMDLKNAEEIYATLAERFEPQYHVALLHGKLKDDEKNRIMTAFSNNEIQLLVSTTVVEVGVDVPNATVMMIFDADRFGL
AQLHQLRGRVGRGKKKAYCLLIADPKNQQGVDRMTIMTETTNGFVVAQKDLELRGPGEVFGDRQSGLPVFKVGDPVADFV
SLQVAQQEVQKIFTVDPTFSQPAYAPLKAYLAQQKQNYQTLD

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=160340 A4W81_RS03705 WP_112221113.1 728632..730680(+) (recG/mmsA) [Latilactobacillus sakei strain TMW 1.3]
CTGTCAGTGTTAAGTTTAACGGATTCTGTGACTGTTTTAACGGGTGTTGGCCCGAAGCGTTTGACAGCCCTCAATCAATT
AGGAATCGCAACAATCAGTGATCTATTGTATTATTTTCCGTTTCGTTACGAGGATTTAAAGGTTAAGGATCTCTCAGAAG
CGGTCGATCAGGAAAAGGTCACCTTAAAAGGAACAGTCGTTGCTGATCCAGTCGTCAGTCGTTGGGGACCGGGTAAGACA
CGGCTAAACGTCCGGTTATTGATTAATCATGATGTCATTATGGTGACTTTTTTCAACCAGCCTTACTTGAAGGATAAATT
TGAAGCCGGTGTTGATATTGCTGTTTATGGTAAATGGGATGCTAGACGGAATAGTTTAACCGGGATGAAGGTTTTAGCGG
TTCAATCGGCTGATAATCCTTCGTTCGCGGCGATTTATTCAACCAATAAAAATGTACGTCAAGGCACGCTCGTAAAATTA
ATTCGCGAAGCATTTGATAATTATCAAAGTGTCATTCCGGATTTGATTCCAGCTGATATTCGTGAGCGGTATAAATTAGT
TTCTGAAGTGGCACTGATTGCTGGAATGCATTTTCCGGAAAGCTATCCAGAAGCAAAGCAGGCGCGACGCACCGCTATTT
TCCATGAATTCTTCTTGTACCAACTGCAATTGCAGGCGATTAAACAAGCAGACCGCCATGTTGAAAATGGCTTAGCACTG
CCTTATCAAAACGCAGCCCTCAAGGAATTTATTAAGACATTACCGTTTGATTTAACGGATGCTCAAAAGCGGGTGGTCAA
CGAAATTTGTTTAGACCTTAAGGCACCGGCACATATGAACCGTCTTTTACAAGGGGATGTTGGGTCTGGGAAAACGATTG
TCGCGGCGATTGCGATGTTTGCTGCGGTGACGGCCGGTTTCCAAGCGGCCTTAATGGTGCCCACCGAAATTTTGGCGGAA
CAACATTATCAGAGCCTACAAAATCTTTATGCACCAATGAATGTGACGGTTGGGTTACTAACTGGTTCGACAACGACCAA
GGAACGACGGACGTTGTTGGCGGATATTGAATCCGGTCGGATCAATATCATTGTCGGAACGCACGCACTTATTCAAGATG
CCGTGGTTTACCACAAGTTAGGATTTGCCGTCATCGATGAACAACATCGATTTGGGGTCAATCAACGGCGCGTGCTACGT
GAAAAAGGCTTGCAGCCTGATATGCTGGCAATGACAGCGACACCGATTCCGCGGACTTTGGCGATTACCGCCTATGGCGA
AATGGATGTTTCGACCATCGATGAGTTACCTAAAGGTCGGATTCCAATTGAAACCAGTTGGGTGCGTAGTAACCAGGTTG
AACAAGCGCTCTCGTTTGTTCAAAAACAATTAGCTGACAACTCGCAAGTTTTTGCGATTACGCCGTTAATTGCGGAGTCG
GAACAAATGGATCTCAAAAATGCGGAAGAAATATACGCAACTTTGGCGGAGCGGTTTGAGCCGCAGTACCATGTGGCACT
ATTACACGGTAAGCTGAAGGATGACGAGAAAAACCGGATTATGACGGCTTTTTCAAACAACGAGATTCAACTACTGGTTT
CAACGACCGTTGTTGAAGTCGGGGTCGATGTGCCTAATGCGACCGTGATGATGATTTTTGATGCTGACCGATTTGGGTTA
GCCCAACTTCATCAATTGCGTGGCCGGGTTGGTCGGGGCAAGAAAAAGGCCTACTGTCTATTGATTGCCGATCCTAAGAA
TCAACAAGGTGTAGATCGAATGACGATCATGACCGAAACGACCAACGGTTTTGTTGTTGCGCAAAAAGATTTGGAATTAC
GAGGCCCTGGTGAGGTCTTTGGCGATCGGCAATCGGGATTACCAGTCTTCAAGGTTGGTGATCCAGTCGCTGATTTTGTC
AGCTTACAGGTCGCACAACAAGAAGTACAAAAAATCTTCACGGTTGATCCTACTTTTAGCCAACCGGCGTACGCGCCTTT
AAAAGCGTATCTCGCACAACAAAAACAAAACTATCAAACATTAGATTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(259-416)

Helicase conserved C-terminal domain (Helicase_C)

(465-573)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(600-673)

RecG wedge domain (RecG_wedge)

(14-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

51.335

98.827

0.507
  recG/mmsA Streptococcus pneumoniae R36A

51.335

98.827

0.507
  recG Bacillus subtilis subsp. subtilis str. 168

49.17

97.214

0.478