Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   A4W81_RS02380 Genome accession   NZ_CP016465
Coordinates   477574..478248 (-) Length   224 a.a.
NCBI ID   WP_011375146.1    Uniprot ID   Q38VM7
Organism   Latilactobacillus sakei strain TMW 1.3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 472574..483248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W81_RS02360 (A4W81_02350) nrdG 473065..473646 (+) 582 WP_016265498.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  A4W81_RS02365 (A4W81_02355) - 473892..475187 (+) 1296 WP_085391509.1 PTS sugar transporter subunit IIC -
  A4W81_RS02370 (A4W81_02360) - 475221..476387 (-) 1167 WP_100970262.1 hypothetical protein -
  A4W81_RS02375 (A4W81_02365) - 476497..477564 (-) 1068 WP_112221064.1 HAMP domain-containing histidine kinase -
  A4W81_RS02380 (A4W81_02370) braR 477574..478248 (-) 675 WP_011375146.1 response regulator transcription factor Regulator
  A4W81_RS02385 (A4W81_02375) - 478388..479164 (+) 777 WP_337962269.1 ABC transporter ATP-binding protein -
  A4W81_RS02390 (A4W81_02380) - 479142..481241 (+) 2100 WP_112221063.1 ABC transporter permease -
  A4W81_RS02395 (A4W81_02385) - 481259..482044 (+) 786 WP_016265492.1 DUF975 family protein -
  A4W81_RS02400 (A4W81_02390) - 482174..482914 (+) 741 WP_035145739.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25960.96 Da        Isoelectric Point: 4.7301

>NTDB_id=160326 A4W81_RS02380 WP_011375146.1 477574..478248(-) (braR) [Latilactobacillus sakei strain TMW 1.3]
MFEIMIVEDDPTIANLIAENLEKWQLKAIIPDDFDTIFDRFLTDKPHLVLLDINLPVYDGFYWCRKIREVSKVPIIFISS
RSTNMDMVMSMNMGGDDFVNKPFSMEVLIAKINALLRRTYNYVDQNTDVIEHNGLLINLQSGGAQVGDTVVDLSKNEYKL
LQFLMRQHGQIVSREKLLRALWDDERFVDDNTLTVNINRLRKKIEQAGLEDYIQTKIGQGYIIP

Nucleotide


Download         Length: 675 bp        

>NTDB_id=160326 A4W81_RS02380 WP_011375146.1 477574..478248(-) (braR) [Latilactobacillus sakei strain TMW 1.3]
ATGTTTGAAATTATGATTGTTGAAGATGATCCTACAATTGCTAACTTGATTGCTGAAAACTTAGAGAAATGGCAGTTAAA
AGCCATTATCCCCGATGATTTCGATACCATTTTTGACCGTTTTTTAACGGATAAACCCCACTTAGTCCTACTAGATATTA
ATTTACCCGTCTATGACGGTTTCTATTGGTGTCGTAAAATTCGTGAAGTTTCTAAAGTGCCGATTATCTTCATCTCTAGC
CGCAGTACTAATATGGATATGGTGATGTCAATGAACATGGGTGGCGATGATTTTGTTAACAAGCCCTTTTCAATGGAAGT
CTTAATCGCTAAAATCAATGCACTTTTACGCCGGACCTATAACTATGTCGATCAAAATACAGACGTCATCGAACATAACG
GCCTTCTAATTAACTTACAAAGTGGTGGGGCTCAAGTTGGTGATACTGTCGTTGACCTCTCTAAAAATGAATATAAGTTA
CTCCAATTTTTGATGCGCCAACACGGTCAAATTGTCAGTCGTGAAAAACTCCTACGGGCGTTATGGGACGACGAACGTTT
TGTCGATGACAATACATTAACCGTCAATATCAATCGGCTGCGTAAAAAAATCGAACAAGCCGGTCTAGAAGACTATATTC
AAACTAAAATCGGCCAAGGCTACATCATCCCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38VM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.575

97.768

0.455
  vicR Streptococcus mutans UA159

34.914

100

0.362