Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   GLA29479_RS08830 Genome accession   NZ_CP013141
Coordinates   2194661..2196067 (+) Length   468 a.a.
NCBI ID   WP_057916960.1    Uniprot ID   A0A0S2DWT0
Organism   Lysobacter antibioticus strain ATCC 29479     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2189661..2201067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLA29479_RS08805 (GLA29479_1998) - 2189899..2190195 (-) 297 WP_057971365.1 type II toxin-antitoxin system RelE/ParE family toxin -
  GLA29479_RS08810 (GLA29479_1999) - 2190192..2190482 (-) 291 WP_057971366.1 DUF1778 domain-containing protein -
  GLA29479_RS08815 (GLA29479_2000) sucD 2190616..2191491 (-) 876 WP_057916963.1 succinate--CoA ligase subunit alpha -
  GLA29479_RS08820 (GLA29479_2001) sucC 2191504..2192670 (-) 1167 WP_057971367.1 ADP-forming succinate--CoA ligase subunit beta -
  GLA29479_RS08825 (GLA29479_2003) - 2192936..2194561 (+) 1626 WP_057916961.1 ATP-binding protein -
  GLA29479_RS08830 (GLA29479_2004) pilR 2194661..2196067 (+) 1407 WP_057916960.1 sigma-54 dependent transcriptional regulator Regulator
  GLA29479_RS25965 (GLA29479_2005) - 2196765..2197184 (+) 420 WP_057971368.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GLA29479_RS25740 (GLA29479_2006) - 2197337..2197753 (+) 417 WP_057916958.1 pilin -
  GLA29479_RS08845 (GLA29479_2007) - 2197809..2199737 (+) 1929 WP_057916957.1 hypothetical protein -
  GLA29479_RS08850 - 2199745..2200917 (+) 1173 WP_057919928.1 DegT/DnrJ/EryC1/StrS family aminotransferase -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 50773.21 Da        Isoelectric Point: 6.7667

>NTDB_id=160283 GLA29479_RS08830 WP_057916960.1 2194661..2196067(+) (pilR) [Lysobacter antibioticus strain ATCC 29479]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASGLGEARSQLLRNRYDLCLTDMRLPDGSGMDLVAEISQKYPNTPVA
MITAFGNVEAAVDALKAGAFDFVAKPVDLAVLRDLVRHALELNDTRRSASEAVGSRLYGESPAMIKLRQTIGKVARSQAP
VYIAGESGVGKELVARTIHSEGGRADGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHVDKPGLFQAADGGTLFLDEVAE
LPLPMQVKLLRAIQEKSIRPVGAQAELVVDVRILSATHKDLAALVAEGRFRQDLYYRINVIELRVPPLRERLDDLPGLAA
KILHRLAGSQGRPVPRLGEDAQEALRAYGFPGNVRELENILERALALAEGEVLNASDLRLPRLATQAPLNELQNAGAAPQ
QAAGAVDPRTLNPRDTATSALPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=160283 GLA29479_RS08830 WP_057916960.1 2194661..2196067(+) (pilR) [Lysobacter antibioticus strain ATCC 29479]
ATGGCAGAAACTCGTAGTGCATTGGTGGTCGATGACGAGCGCGATATTCGCGAGCTCCTCGTCATGACCTTGGGCCGCAT
GGGCCTGCGTTGCGACACCGCATCGGGCCTCGGCGAGGCGCGCAGCCAACTGCTGCGCAATCGTTACGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCGGGCATGGACCTGGTCGCCGAGATCAGCCAGAAATACCCCAATACCCCGGTCGCG
ATGATCACCGCCTTCGGCAACGTCGAAGCCGCGGTCGACGCGCTCAAGGCCGGCGCCTTCGATTTCGTCGCCAAGCCGGT
CGACCTGGCGGTGCTGCGCGATCTCGTGCGCCACGCGCTCGAACTCAACGACACCCGCCGCAGCGCCAGCGAGGCGGTCG
GCTCGCGCCTGTACGGCGAATCGCCGGCGATGATCAAGCTGCGCCAGACCATCGGCAAGGTCGCCCGCAGCCAGGCCCCG
GTGTATATCGCCGGCGAGTCCGGCGTCGGCAAGGAACTGGTCGCGCGCACCATCCATTCCGAAGGCGGCCGCGCCGACGG
CCCGTTCGTGCCGGTCAACTGCGGCGCGATTCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCACAAGAAGGGCAGCT
TCACCGGCGCCCACGTCGACAAGCCCGGCCTGTTCCAGGCCGCCGACGGCGGCACCTTGTTCCTGGACGAAGTCGCCGAG
CTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCCATTCGTCCGGTCGGCGCCCAGGCCGAGCT
CGTCGTCGACGTGCGCATTCTGTCGGCGACCCACAAGGACCTCGCCGCGCTGGTCGCCGAAGGCCGCTTCCGCCAGGACT
TGTACTACCGCATCAACGTCATCGAGCTGCGCGTGCCGCCGTTGCGCGAACGCCTCGACGACCTGCCCGGCCTGGCCGCG
AAGATCCTGCACCGCCTCGCCGGCAGCCAGGGCCGTCCGGTGCCGCGCCTCGGCGAGGACGCCCAGGAGGCGCTGCGCGC
CTACGGCTTCCCGGGCAACGTGCGCGAGCTCGAGAACATTCTCGAACGCGCGCTCGCATTGGCCGAAGGCGAAGTCCTCA
ACGCCAGCGACCTGCGCCTGCCGCGCCTGGCCACCCAGGCCCCTTTGAACGAACTGCAGAACGCAGGCGCAGCGCCGCAG
CAAGCGGCCGGCGCCGTCGACCCGCGCACCCTCAACCCGCGCGACACCGCGACCAGCGCCCTGCCTTCTTATATAGAAGA
GATCGAGCGCGCCGCGATCCAGCAGGCCCTGCAGGAAAACCGCTACAACAAGACCCGCACTGCGGCCGCACTCGGCATCA
CCTTCCGCGCGCTGCGCTACAAGCTCAAGAAGCTCGGGATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(425-465)

Sigma-54 interaction domain (Sigma54_activat)

(138-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S2DWT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.796

99.359

0.624
  pilR Acinetobacter baumannii strain A118

48.847

100

0.498

Multiple sequence alignment