Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   DW68_RS13890 Genome accession   NZ_CP013124
Coordinates   2989322..2992156 (-) Length   944 a.a.
NCBI ID   WP_017363961.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina S5.2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2984322..2997156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DW68_RS13865 (DW68_013865) - 2984839..2985456 (-) 618 WP_017363958.1 SPOR domain-containing protein -
  DW68_RS13870 (DW68_013870) folC 2985472..2986749 (-) 1278 WP_017363959.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  DW68_RS13875 (DW68_013875) accD 2986746..2987630 (-) 885 WP_013715129.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  DW68_RS13880 (DW68_013880) - 2987771..2988403 (-) 633 WP_036994533.1 phosphoribosylanthranilate isomerase -
  DW68_RS13885 (DW68_013885) truA 2988450..2989313 (-) 864 WP_013715127.1 tRNA pseudouridine(38-40) synthase TruA -
  DW68_RS13890 (DW68_013890) fimV 2989322..2992156 (-) 2835 WP_017363961.1 FimV/HubP family polar landmark protein Machinery gene
  DW68_RS13895 (DW68_013895) - 2992312..2993322 (-) 1011 WP_017363962.1 aspartate-semialdehyde dehydrogenase -
  DW68_RS13900 (DW68_013900) asd 2993465..2994577 (-) 1113 WP_017363963.1 aspartate-semialdehyde dehydrogenase -
  DW68_RS13905 (DW68_013905) leuB 2994634..2995716 (-) 1083 WP_017363964.1 3-isopropylmalate dehydrogenase -
  DW68_RS13910 (DW68_013910) leuD 2995799..2996446 (-) 648 WP_013715122.1 3-isopropylmalate dehydratase small subunit -

Sequence

Protein


Download         Length: 944 a.a.        Molecular weight: 99019.95 Da        Isoelectric Point: 3.7466

>NTDB_id=160084 DW68_RS13890 WP_017363961.1 2989322..2992156(-) (fimV) [Ectopseudomonas mendocina S5.2]
MVRVRKLVLAIAAASALSSGMAHALGLGEVTLQSSLNQPLVAEIELLEVRDLASNEVIPSLASPEEFVKAGVDRQYFLTD
LKFTPVLKPNGKSVIRVTSSKAVREPYLNFLVEVLWPNGRLLREYTLLLDPPLYSPQTTVAAAPQLPIAAPAPRPSVAPA
PVPRSAAPAPAPRPAAPAPASRAISGNEYRTTANDTLWEIAQRVGGGSSVNQTMLAIQDLNPDAFIGGNINRMKSGQVLR
LPDEQQIRSRSNAEAVAQVAEQNAAWREGRAVASRQLDATRRTTAGSAPATAESADSLKLVAAEAGQSTRGSDTGSANSK
ALADKLAVTQESLDSTRRENAELQSRVGDLQSQLDKLQRLVELKDSQLAKLQADLSAAPAAEEGATAQAPVTEPASQAPA
AQPEAAPPAAEAATPPASPPEEAAPDYNYSEEPAASVEDSAAANEQPAEEPAAAVEPAAPAKPAEDAKPAAPSPAPAPAP
QSFIDDLMANPMTLGLAGGGALLLLLVALMALSRRNAMKEAELQDELADDLSQDQAFASDLDMPEDSLAGLDDEPVATPV
AGEERVTAQTGDALGEADIYIAYGRFNQAAELLQNAINDEPHRSDLRLKLMEVYAELGDREGFARQDNELREIGGATAEA
EQLKSKYPAIAAFAGAGVVAAAASAEDDVDAFSLDDLSLDEPVAEAPVAASGDLDDAFDLSLDDLEADLENDLQSAKADE
APLSLDDELDFGLIDEPAAPTAAADDDLDFDLALGDDKVELSQPADDLSAFSLDLDEPAAASSDETDEFLLSLDDDTPLS
QPADDLSGLSLDLPEETPAADLDLPADFDLSLEDEAPVQPAVEPDSFAAQLDEVTAELDQLSNDFDEPQAPPLASVDSLS
SDLDGDDDFDFLSGTDETATKLDLARAYIDMGDTEGARDILDEVVAEGNDAQQQEAREMISKLV

Nucleotide


Download         Length: 2835 bp        

>NTDB_id=160084 DW68_RS13890 WP_017363961.1 2989322..2992156(-) (fimV) [Ectopseudomonas mendocina S5.2]
ATGGTTCGGGTTCGCAAACTGGTGCTGGCAATCGCAGCCGCTTCCGCGCTGTCTTCCGGTATGGCGCATGCGCTGGGTTT
GGGTGAAGTTACCCTGCAATCTTCGTTGAATCAGCCGTTGGTAGCGGAAATCGAATTGCTGGAGGTGCGCGACCTAGCCT
CCAATGAGGTGATTCCGAGCCTTGCGTCCCCTGAAGAGTTCGTCAAGGCGGGGGTTGATCGTCAGTACTTTCTGACCGAT
CTCAAGTTCACTCCCGTATTGAAGCCTAATGGCAAGAGCGTTATTCGTGTCACTTCAAGTAAGGCCGTCCGCGAGCCTTA
TCTCAACTTCCTGGTGGAAGTGCTCTGGCCAAACGGTCGCTTGCTGCGCGAATACACCCTGCTGCTCGATCCGCCACTTT
ACTCTCCGCAAACGACAGTGGCTGCTGCTCCGCAACTGCCGATCGCCGCGCCAGCGCCGCGTCCGTCTGTGGCTCCGGCA
CCAGTGCCGCGCAGTGCCGCTCCGGCTCCGGCTCCACGTCCTGCAGCGCCGGCCCCGGCTTCACGCGCCATTTCCGGTAA
CGAATACAGAACCACTGCCAATGATACGCTCTGGGAAATCGCTCAGCGTGTCGGTGGTGGTTCTTCGGTCAATCAGACCA
TGCTGGCCATCCAGGACCTGAATCCTGACGCTTTCATTGGCGGCAATATCAACCGCATGAAGAGCGGCCAGGTGCTGCGC
CTGCCGGACGAGCAGCAGATTCGCAGTCGCAGCAATGCAGAGGCGGTTGCTCAGGTGGCTGAGCAGAATGCCGCCTGGCG
CGAAGGTCGCGCCGTTGCCTCGCGCCAGCTGGATGCCACTCGCCGTACCACCGCAGGTTCTGCGCCGGCCACTGCCGAGT
CGGCTGATAGCCTGAAACTGGTTGCGGCTGAGGCAGGTCAGTCCACTCGCGGTAGCGATACCGGGTCTGCCAACAGCAAG
GCGCTGGCTGACAAGCTGGCCGTGACCCAGGAAAGCCTGGACTCGACCCGTCGCGAGAACGCCGAGCTGCAGAGTCGCGT
CGGTGACCTGCAAAGTCAGCTGGATAAGCTGCAGCGGCTGGTCGAACTGAAAGATAGCCAGTTGGCCAAGTTGCAGGCCG
ATCTGTCGGCTGCTCCAGCTGCTGAGGAAGGCGCAACTGCACAAGCCCCGGTCACCGAGCCTGCCTCGCAAGCTCCTGCT
GCACAGCCTGAGGCAGCGCCGCCCGCTGCGGAGGCTGCAACGCCGCCGGCTTCGCCGCCCGAAGAGGCGGCGCCTGATTA
CAACTATTCCGAGGAGCCCGCGGCGTCCGTTGAAGACAGCGCCGCCGCCAATGAACAGCCGGCCGAGGAGCCGGCTGCTG
CCGTTGAGCCTGCTGCTCCGGCCAAGCCGGCTGAGGATGCCAAGCCCGCGGCGCCGTCTCCTGCACCCGCTCCGGCCCCA
CAGAGCTTTATCGATGACCTGATGGCCAACCCGATGACTCTGGGGCTGGCTGGCGGCGGTGCGCTGCTGCTTCTGCTGGT
CGCTCTGATGGCGCTGTCGCGTCGTAATGCGATGAAGGAGGCCGAGCTGCAGGACGAGCTGGCCGACGACCTGTCTCAGG
ATCAGGCCTTTGCATCCGATCTGGATATGCCGGAAGACAGTCTCGCTGGGCTCGATGACGAGCCGGTTGCCACTCCGGTC
GCAGGTGAGGAGCGAGTTACTGCGCAGACTGGTGATGCGCTGGGTGAGGCGGATATCTACATCGCCTATGGTCGTTTCAA
TCAGGCAGCTGAACTGCTGCAGAATGCGATCAACGACGAGCCGCATCGTAGCGACTTGCGCCTGAAGCTGATGGAGGTTT
ACGCCGAGCTGGGTGACCGCGAAGGCTTTGCCCGTCAGGACAACGAGTTGCGCGAGATCGGTGGGGCGACCGCCGAAGCT
GAGCAACTGAAGTCCAAGTACCCGGCCATTGCTGCCTTTGCAGGTGCTGGCGTGGTGGCTGCTGCGGCGTCCGCTGAGGA
CGACGTGGACGCGTTCAGCCTGGATGATCTCAGTCTGGATGAACCGGTCGCTGAGGCCCCTGTTGCCGCATCGGGTGATC
TGGATGATGCCTTCGACCTGAGCCTCGACGATCTTGAGGCTGATCTGGAGAATGACCTGCAGTCCGCCAAGGCTGACGAA
GCGCCGCTGTCGCTGGATGACGAGCTGGATTTCGGCCTGATCGACGAGCCAGCCGCTCCGACCGCTGCCGCTGATGACGA
CCTGGACTTCGATCTGGCCCTGGGCGACGACAAGGTCGAGCTGTCCCAGCCGGCTGACGATCTCTCTGCGTTCAGCCTCG
ATCTTGACGAGCCTGCTGCCGCCTCCAGCGACGAAACGGATGAGTTCCTGCTTAGCCTCGACGATGATACGCCGCTGAGT
CAGCCGGCCGATGACCTGTCCGGCTTGAGCCTCGACCTGCCAGAAGAAACGCCGGCTGCCGACCTTGATCTACCTGCCGA
TTTCGACCTATCGCTCGAAGACGAAGCGCCGGTTCAACCTGCTGTAGAGCCGGACAGCTTCGCCGCGCAACTCGACGAAG
TGACTGCCGAGCTGGATCAGCTGTCGAATGACTTCGATGAGCCGCAAGCCCCCCCATTGGCCTCGGTGGACAGCCTTTCC
AGCGATCTGGATGGTGACGACGACTTCGATTTCCTCTCCGGAACCGATGAGACTGCGACCAAGCTGGATCTGGCGCGCGC
CTACATCGACATGGGGGACACCGAAGGGGCCCGCGACATTCTCGACGAAGTGGTCGCCGAAGGTAACGACGCACAGCAGC
AGGAAGCTCGCGAGATGATTTCCAAGTTGGTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

56.863

100

0.584

Multiple sequence alignment