Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   SE1039_RS13330 Genome accession   NZ_CP013114
Coordinates   2778615..2780243 (+) Length   542 a.a.
NCBI ID   WP_056936173.1    Uniprot ID   -
Organism   Staphylococcus equorum strain KS1039     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2773615..2785243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE1039_RS13315 (SE1039_26430) cch1 2774954..2776747 (+) 1794 WP_056936170.1 cassette chromosome replicative helicase -
  SE1039_RS13320 (SE1039_26440) - 2776810..2777067 (+) 258 WP_056936171.1 hypothetical protein -
  SE1039_RS13325 (SE1039_26450) ccrA 2777245..2778594 (+) 1350 WP_056936172.1 cassette chromosome recombinase CcrA Machinery gene
  SE1039_RS13330 (SE1039_26460) ccrB 2778615..2780243 (+) 1629 WP_056936173.1 cassette chromosome recombinase CcrB Machinery gene
  SE1039_RS13335 - 2780718..2781056 (+) 339 WP_011302037.1 SAUGI family uracil-DNA glycosylase inhibitor -
  SE1039_RS13340 (SE1039_26470) - 2781152..2781463 (+) 312 WP_056936174.1 DUF960 family protein -
  SE1039_RS13345 (SE1039_26480) - 2781479..2781991 (+) 513 WP_056936175.1 DUF1643 domain-containing protein -
  SE1039_RS13350 (SE1039_26490) - 2782117..2782728 (+) 612 WP_056936176.1 hypothetical protein -
  SE1039_RS14055 (SE1039_26500) - 2782748..2783248 (+) 501 WP_230815314.1 hypothetical protein -
  SE1039_RS13360 (SE1039_26510) - 2783493..2783750 (+) 258 WP_056936177.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62322.13 Da        Isoelectric Point: 9.4719

>NTDB_id=160024 SE1039_RS13330 WP_056936173.1 2778615..2780243(+) (ccrB) [Staphylococcus equorum strain KS1039]
MQQLKQKRVGIYVRVSTEMQSAEGYSIDGQINQIKEYCNFHHFEVKDIYADRGISGKSMNRPELQRMLHDANEGLIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKMANALNHKGYVTKKGNPFSTSAIAYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDNPVVADGKHSPIISQELWDKVHSRMKQVSQKPQVHGKGTNLLTGIVHCPQCSAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQDSQIDMAALNHDIAYKQQQFD
EINTKLKNLIQTIEGNPDLASTLKPTIHQYETQLNDITNQMNQLKQQQNQEKPSYDTKQIAALLQQIFQNVESMDKAQLK
ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNDTPLDEVLLSTSSLFLPQTLFLQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=160024 SE1039_RS13330 WP_056936173.1 2778615..2780243(+) (ccrB) [Staphylococcus equorum strain KS1039]
ATGCAACAACTCAAACAAAAACGTGTCGGTATTTATGTCCGTGTATCCACTGAAATGCAAAGTGCAGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATATTGTAACTTTCATCATTTCGAGGTCAAAGATATATACGCCGATCGTGGTA
TATCAGGAAAGTCTATGAACCGTCCTGAACTTCAACGTATGTTACATGATGCAAATGAAGGTCTCATCGATTGTGTCATG
GTATATAAAACGAATAGACTCGCACGTAATACATCAGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCCTGTCTGAGCGTATGGAAGTTAATACAAGCAGTGGTAAACTGATGCTACAAATACTTGCAAGCTTTTCTG
AATTTGAAAGAAACAATATTGTCGAGAACGTATTCATGGGACAAACCCGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTGGGCTATGACAAAATACCGGATAGCAAGCATGAACTCATGATAAATCAACATGAAGCGAATATCGTCAAATA
TATCTTTGAGTCATATGCTAAAGGCCACGGATATCGTAAAATGGCTAATGCACTTAATCATAAAGGTTATGTAACAAAGA
AAGGTAATCCATTCAGTACATCAGCTATAGCTTATATCCTTTCCAATCCCTTCTACATTGGTAAAATTCAATTTGCGAAG
TATAAAGATTGGAATGAAAAGCGACGTAAAGGCCTTAATGATAATCCTGTAGTAGCTGACGGGAAGCATTCGCCTATCAT
TAGTCAAGAACTATGGGATAAAGTACATTCACGTATGAAACAAGTTAGTCAAAAACCTCAAGTTCATGGAAAAGGAACCA
ATCTATTAACAGGCATCGTTCACTGTCCACAATGTAGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGTAGTAACTTCCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGT
TAGAGCGGATGTGATTGAGAAATACGTTATGGATCAAATACTTGAAATTGTCAAAAGCGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGATAGTCAAATTGATATGGCTGCACTTAACCATGATATCGCATATAAGCAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAATTCAAACCATCGAAGGCAATCCAGACTTAGCATCTACGCTCAAACCAACCAT
TCATCAATATGAAACACAACTGAATGATATCACAAACCAAATGAATCAACTCAAGCAGCAACAAAACCAAGAAAAACCAT
CTTACGATACGAAGCAAATCGCTGCCCTATTACAACAAATATTTCAAAACGTAGAATCAATGGATAAAGCACAACTCAAA
GCATTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGACGGTAATCATAAAAAACAGTTCTACGTTACACTCAA
ACTCAATAATGAAATTATTAAACAACTTTTCAATGATACCCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACGCTCTTTCTTCAAATCTAA

Domains

Predicted by InterProScan.

Recombinase (Recombinase)

(180-281)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

85.055

100

0.851

Multiple sequence alignment