Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   SE1039_RS08510 Genome accession   NZ_CP013114
Coordinates   1744913..1745956 (-) Length   347 a.a.
NCBI ID   WP_002511392.1    Uniprot ID   A0A9X4QYU5
Organism   Staphylococcus equorum strain KS1039     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1739913..1750956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE1039_RS08480 (SE1039_16680) - 1740347..1741585 (-) 1239 WP_056935763.1 aminopeptidase -
  SE1039_RS08485 (SE1039_16690) - 1741601..1741783 (-) 183 WP_226956897.1 DUF1128 family protein -
  SE1039_RS08490 (SE1039_16700) - 1741939..1742403 (+) 465 WP_002507209.1 low molecular weight protein-tyrosine-phosphatase -
  SE1039_RS08495 (SE1039_16710) - 1742410..1742694 (+) 285 WP_002507208.1 hypothetical protein -
  SE1039_RS08500 (SE1039_16720) - 1742925..1744091 (+) 1167 WP_056935764.1 YihY/virulence factor BrkB family protein -
  SE1039_RS08505 (SE1039_16730) vraR 1744294..1744923 (-) 630 WP_056935765.1 response regulator transcription factor Regulator
  SE1039_RS08510 (SE1039_16740) vraS 1744913..1745956 (-) 1044 WP_002511392.1 sensor histidine kinase Regulator
  SE1039_RS08515 (SE1039_16750) liaF 1745953..1746654 (-) 702 WP_002507204.1 cell wall-active antibiotics response protein LiaF -
  SE1039_RS08520 (SE1039_16760) - 1746671..1747057 (-) 387 WP_002507203.1 hypothetical protein -
  SE1039_RS08525 (SE1039_16770) map 1747162..1747914 (-) 753 WP_002507202.1 type I methionyl aminopeptidase -
  SE1039_RS08530 (SE1039_16780) - 1748095..1749081 (+) 987 WP_002507201.1 FUSC family protein -
  SE1039_RS08535 (SE1039_16790) - 1749180..1749899 (-) 720 WP_002507200.1 type 1 glutamine amidotransferase -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 39973.32 Da        Isoelectric Point: 5.8180

>NTDB_id=160017 SE1039_RS08510 WP_002511392.1 1744913..1745956(-) (vraS) [Staphylococcus equorum strain KS1039]
MNHYIRAIGSMLILVYSTFFALFFIDKVFVNIVYFQGMFYTQIFGIPVLLFLNLLVIFLCIIVGSVLAYKINQQNHWLQD
QIERSIEGQTVGINDQNIELYNETIELYQTLVPLNQEVHKLRMKTQNLTNESYNINDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKETQLEAPLDQQIPILEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIKDLVVDLKKKVPMKVVHDI
EEFEVPKGIEDHLFRITQEALSNTLRHSKGTKVTVELFNMADYLLLRIQDNGKGFNVDDKVEQSYGLKNMRERALEIGAT
FHIVSLPDSGTRIEVKAPLNKEDSHDD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=160017 SE1039_RS08510 WP_002511392.1 1744913..1745956(-) (vraS) [Staphylococcus equorum strain KS1039]
ATGAATCACTACATAAGAGCAATAGGATCCATGTTGATATTAGTTTATAGCACATTTTTTGCTCTGTTTTTTATCGATAA
AGTATTTGTAAACATAGTATATTTTCAAGGTATGTTTTATACACAAATTTTTGGAATACCAGTTTTACTATTTTTAAACT
TATTAGTTATTTTTCTTTGTATTATTGTAGGATCGGTATTAGCATATAAAATAAATCAACAAAATCACTGGTTACAAGAC
CAAATAGAACGTTCTATTGAAGGTCAAACAGTAGGTATTAATGATCAAAACATTGAATTATATAATGAAACAATTGAATT
GTATCAAACGTTAGTTCCATTAAATCAAGAAGTTCACAAATTACGTATGAAAACGCAAAACTTAACAAATGAATCATATA
ATATAAATGATGTGAAAGTTAAAAAGATTATAGAAGATGAACGACAAAGGCTTGCACGTGAATTACACGATTCAGTAAGT
CAGCAATTATTTGCAGCGAGTATGATGCTTTCAGCTATTAAAGAAACACAGTTAGAAGCACCTTTAGATCAACAAATTCC
GATATTAGAAAAAATGGTACAAGATTCTCAGTTAGAGATGAGAGCTTTACTATTACATTTAAGACCTATTGGATTAAAAG
ACAAATCATTAGGTGAAGGTATTAAAGATTTAGTCGTTGATTTAAAGAAAAAAGTACCTATGAAAGTTGTACATGATATT
GAAGAATTTGAAGTACCTAAAGGTATTGAAGATCATTTGTTCAGAATTACGCAAGAAGCTTTATCTAATACTTTGAGACA
TTCAAAAGGTACCAAAGTAACAGTAGAATTGTTTAATATGGCAGATTACTTATTATTACGCATTCAAGACAATGGTAAAG
GGTTCAATGTTGATGATAAGGTAGAACAAAGTTATGGTTTAAAAAACATGAGAGAACGTGCGCTTGAAATTGGTGCAACG
TTTCATATTGTTTCTTTACCAGATTCAGGTACAAGAATTGAAGTAAAGGCACCATTAAATAAGGAGGATTCACATGACGA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

88.184

100

0.882


Multiple sequence alignment