Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SE1039_RS08505 Genome accession   NZ_CP013114
Coordinates   1744294..1744923 (-) Length   209 a.a.
NCBI ID   WP_056935765.1    Uniprot ID   -
Organism   Staphylococcus equorum strain KS1039     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1739294..1749923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE1039_RS08475 (SE1039_16670) - 1739731..1740252 (-) 522 WP_002511389.1 acyl-CoA thioesterase -
  SE1039_RS08480 (SE1039_16680) - 1740347..1741585 (-) 1239 WP_056935763.1 aminopeptidase -
  SE1039_RS08485 (SE1039_16690) - 1741601..1741783 (-) 183 WP_226956897.1 DUF1128 family protein -
  SE1039_RS08490 (SE1039_16700) - 1741939..1742403 (+) 465 WP_002507209.1 low molecular weight protein-tyrosine-phosphatase -
  SE1039_RS08495 (SE1039_16710) - 1742410..1742694 (+) 285 WP_002507208.1 hypothetical protein -
  SE1039_RS08500 (SE1039_16720) - 1742925..1744091 (+) 1167 WP_056935764.1 YihY/virulence factor BrkB family protein -
  SE1039_RS08505 (SE1039_16730) vraR 1744294..1744923 (-) 630 WP_056935765.1 response regulator transcription factor Regulator
  SE1039_RS08510 (SE1039_16740) vraS 1744913..1745956 (-) 1044 WP_002511392.1 sensor histidine kinase Regulator
  SE1039_RS08515 (SE1039_16750) liaF 1745953..1746654 (-) 702 WP_002507204.1 cell wall-active antibiotics response protein LiaF -
  SE1039_RS08520 (SE1039_16760) - 1746671..1747057 (-) 387 WP_002507203.1 hypothetical protein -
  SE1039_RS08525 (SE1039_16770) map 1747162..1747914 (-) 753 WP_002507202.1 type I methionyl aminopeptidase -
  SE1039_RS08530 (SE1039_16780) - 1748095..1749081 (+) 987 WP_002507201.1 FUSC family protein -
  SE1039_RS08535 (SE1039_16790) - 1749180..1749899 (-) 720 WP_002507200.1 type 1 glutamine amidotransferase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23750.25 Da        Isoelectric Point: 4.7666

>NTDB_id=160016 SE1039_RS08505 WP_056935765.1 1744294..1744923(-) (vraR) [Staphylococcus equorum strain KS1039]
MTIKVLFVDDHEMVRIGISSYLSTQPDIDIVGEGQSGKDAIEKAHQLNPDLILMDLLMDDMDGVDATEQIKKDLPHIKVV
MLTSYIEDNEVYRALDSGVDSYILKTTSASDIAEAIRKTYKNESVFESEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=160016 SE1039_RS08505 WP_056935765.1 1744294..1744923(-) (vraR) [Staphylococcus equorum strain KS1039]
ATGACGATTAAAGTTTTGTTTGTTGATGATCATGAAATGGTTCGAATTGGAATTTCTAGTTACTTATCTACACAGCCAGA
TATTGATATTGTAGGGGAAGGTCAGTCAGGAAAAGATGCGATTGAAAAGGCTCATCAACTAAATCCAGATTTAATCTTAA
TGGACTTGCTTATGGACGATATGGATGGTGTCGATGCTACCGAGCAAATTAAAAAAGACTTACCCCATATTAAAGTTGTA
ATGTTAACAAGTTACATTGAAGATAATGAAGTATATCGTGCTTTAGATTCTGGCGTAGACAGCTATATTTTGAAAACGAC
TAGTGCTAGTGATATAGCCGAGGCTATTCGTAAAACGTATAAAAATGAGTCTGTATTTGAATCTGAAGTGCTTGTGAAGA
TGAGAAATAGAATGAAACAACGTGCCGAATTATATGAAATGTTAACGGAACGAGAAATGGAAATTCTATTACTTATCGCA
AAAGGTTACTCAAACCAAGAAATTGCGAGTGCATCACACATAACGATTAAAACAGTAAAAACACATGTAAGTAATATATT
AAGTAAATTAGAAGTACAAGATAGAACACAAGCAGTTATTTATGCATTCCAGCATAATTTAATACAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

88.517

100

0.885

Multiple sequence alignment