Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   SE1039_RS03920 Genome accession   NZ_CP013114
Coordinates   825151..825714 (+) Length   187 a.a.
NCBI ID   WP_002508070.1    Uniprot ID   A0AAP7LV23
Organism   Staphylococcus equorum strain KS1039     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 820151..830714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE1039_RS03895 (SE1039_07790) - 820826..822334 (+) 1509 WP_021339510.1 bifunctional metallophosphatase/5'-nucleotidase -
  SE1039_RS03900 (SE1039_07800) - 822596..823198 (-) 603 WP_002508074.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  SE1039_RS03905 (SE1039_07810) - 823205..823390 (-) 186 WP_002508073.1 YkvS family protein -
  SE1039_RS03910 (SE1039_07820) - 823591..824580 (+) 990 WP_002508072.1 lipoate--protein ligase -
  SE1039_RS03915 (SE1039_07830) - 824680..824898 (-) 219 WP_002508071.1 IDEAL domain-containing protein -
  SE1039_RS03920 (SE1039_07840) comK/comK1 825151..825714 (+) 564 WP_002508070.1 competence protein ComK Regulator
  SE1039_RS03935 (SE1039_07850) - 826152..826694 (-) 543 WP_002508069.1 recombinase family protein -
  SE1039_RS03940 (SE1039_07860) - 826803..828254 (+) 1452 WP_056935435.1 SulP family inorganic anion transporter -
  SE1039_RS03945 (SE1039_07870) - 828268..828681 (+) 414 WP_002508067.1 universal stress protein -
  SE1039_RS03950 (SE1039_07880) - 828812..828946 (-) 135 WP_056935436.1 hypothetical protein -
  SE1039_RS03955 (SE1039_07890) - 828960..829844 (-) 885 WP_056935437.1 permease -
  SE1039_RS03960 (SE1039_07900) - 829920..830240 (-) 321 WP_056935438.1 ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 22058.46 Da        Isoelectric Point: 9.1458

>NTDB_id=160001 SE1039_RS03920 WP_002508070.1 825151..825714(+) (comK/comK1) [Staphylococcus equorum strain KS1039]
MIQQYIIKKGDMALQPCNLSIGLNEGTCVLKYKEERDIVKERTHKIIDRSCRFYGSSYVFKKEDTMRITGINSKPPILFT
PLFPTYFFPTHSDRKEENTWINIHYVQTIRALKDKKCKITFVDNQTIVVNISAHSMHHQYLNGIYYYYMMDRAARVATFD
PESPIDYTKPQLNIYEALAKYSLFENK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=160001 SE1039_RS03920 WP_002508070.1 825151..825714(+) (comK/comK1) [Staphylococcus equorum strain KS1039]
ATGATTCAACAATACATTATTAAAAAAGGTGATATGGCTCTTCAACCTTGTAATTTATCTATAGGACTAAATGAAGGTAC
TTGTGTATTAAAGTATAAGGAGGAGCGTGATATCGTAAAGGAAAGGACACATAAGATTATAGATCGTTCATGTAGATTTT
ATGGTAGCAGCTATGTATTTAAAAAAGAAGACACAATGAGAATTACAGGTATTAATAGTAAACCCCCGATATTATTCACT
CCATTATTTCCTACTTATTTTTTTCCTACACATTCAGACCGAAAAGAAGAAAACACTTGGATTAATATTCATTATGTACA
AACCATAAGAGCTTTAAAAGATAAAAAATGTAAAATCACATTTGTCGATAACCAGACTATAGTTGTTAATATTTCAGCAC
ACAGTATGCATCATCAATACTTAAATGGTATATATTATTACTATATGATGGATAGAGCAGCTAGGGTGGCTACTTTTGAT
CCTGAATCTCCTATAGACTATACGAAACCACAATTAAATATTTATGAAGCATTAGCAAAATATTCTCTATTTGAAAATAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(3-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

51.913

97.861

0.508
  comK/comK1 Staphylococcus aureus N315

51.913

97.861

0.508

Multiple sequence alignment