Detailed information NTG0159986

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: BBD27_RS04395
• Genome accession: NZ_CP016394
• Coordinates: 828733..829833 (-)
• Length: 366 a.a.
• NCBI ID: WP_024704278.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain ND07
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 823733..834833

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BBD27_RS04380 (BBD27_0846)	-	824584..825456 (-)	873	WP_011681764.1	YitT family protein	-
BBD27_RS04385 (BBD27_0847)	trpS	825884..826906 (+)	1023	WP_011681763.1	tryptophan--tRNA ligase	-
BBD27_RS04390 (BBD27_0848)	guaB	827083..828564 (+)	1482	WP_011227627.1	IMP dehydrogenase	-
BBD27_RS04395 (BBD27_0849)	recF	828733..829833 (-)	1101	WP_024704278.1	DNA replication/repair protein RecF	Machinery gene
BBD27_RS04400 (BBD27_0850)	yaaA	829836..830212 (-)	377	Protein_815	S4 domain-containing protein YaaA	-
BBD27_RS04405 (BBD27_0851)	yfmF	830291..831541 (+)	1251	WP_024704277.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
BBD27_RS04410 (BBD27_0852)	yfmH	831543..832820 (+)	1278	WP_024704276.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
BBD27_RS04415 (BBD27_0853)	-	832879..833736 (+)	858	WP_011681760.1	helix-turn-helix domain-containing protein	-
BBD27_RS04420 (BBD27_0854)	pgsA	833749..834291 (+)	543	WP_024704275.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42172.35 Da
• Isoelectric Point: 9.2442

>NTDB_id=159986 BBD27_RS04395 WP_024704278.1 828733..829833(-) (recF) [Streptococcus thermophilus strain ND07]
MWLKKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=159986 BBD27_RS04395 WP_024704278.1 828733..829833(-) (recF) [Streptococcus thermophilus strain ND07]
ATGTGGCTTAAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACGACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432