Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BA058_RS05955 Genome accession   NZ_CP016358
Coordinates   1244277..1245014 (+) Length   245 a.a.
NCBI ID   WP_000197692.1    Uniprot ID   -
Organism   Escherichia coli strain K-15KW01     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1239277..1250014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA058_RS05940 (BA058_05940) clpC 1239731..1242304 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  BA058_RS05945 (BA058_05945) yfiH 1242434..1243165 (-) 732 WP_000040138.1 purine nucleoside phosphorylase YfiH -
  BA058_RS05950 (BA058_05950) rluD 1243162..1244142 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BA058_RS05955 (BA058_05955) comL 1244277..1245014 (+) 738 WP_000197692.1 outer membrane protein assembly factor BamD Machinery gene
  BA058_RS05965 (BA058_05965) raiA 1245284..1245625 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  BA058_RS27765 pheL 1245729..1245776 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  BA058_RS05970 (BA058_05970) pheA 1245875..1247035 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  BA058_RS05975 (BA058_05975) tyrA 1247078..1248199 (-) 1122 WP_000225234.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  BA058_RS05980 (BA058_05980) aroF 1248210..1249280 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  BA058_RS05985 (BA058_05985) yfiL 1249490..1249855 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27928.53 Da        Isoelectric Point: 7.1589

>NTDB_id=159767 BA058_RS05955 WP_000197692.1 1244277..1245014(+) (comL) [Escherichia coli strain K-15KW01]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQRFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=159767 BA058_RS05955 WP_000197692.1 1244277..1245014(+) (comL) [Escherichia coli strain K-15KW01]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAAGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376