Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | BBB50_RS01640 | Genome accession | NZ_CP016324 |
| Coordinates | 312564..313154 (+) | Length | 196 a.a. |
| NCBI ID | WP_000157690.1 | Uniprot ID | A0A366AJW1 |
| Organism | Vibrio cholerae 2740-80 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 307564..318154
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BBB50_RS01615 (BBB50_01615) | - | 308120..310123 (-) | 2004 | WP_001895336.1 | transposase domain-containing protein | - |
| BBB50_RS01620 (BBB50_01620) | - | 310135..310359 (-) | 225 | WP_000373567.1 | helix-turn-helix domain-containing protein | - |
| BBB50_RS01625 (BBB50_01625) | - | 310512..311249 (+) | 738 | WP_000005494.1 | LexA family transcriptional regulator | - |
| BBB50_RS01630 (BBB50_01630) | pilM | 311518..311997 (+) | 480 | Protein_293 | type IV pilus assembly protein PilM | - |
| BBB50_RS01635 (BBB50_01635) | pilN | 311987..312571 (+) | 585 | WP_000902745.1 | PilN domain-containing protein | Machinery gene |
| BBB50_RS01640 (BBB50_01640) | pilO | 312564..313154 (+) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| BBB50_RS01645 (BBB50_01645) | pilP | 313144..313662 (+) | 519 | WP_000792032.1 | pilus assembly protein PilP | Machinery gene |
| BBB50_RS01650 (BBB50_01650) | pilQ | 313688..315403 (+) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ | Machinery gene |
| BBB50_RS01655 (BBB50_01655) | aroK | 315590..316114 (+) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| BBB50_RS01660 (BBB50_01660) | aroB | 316142..317227 (+) | 1086 | WP_000439805.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22877.27 Da Isoelectric Point: 4.4169
>NTDB_id=159679 BBB50_RS01640 WP_000157690.1 312564..313154(+) (pilO) [Vibrio cholerae 2740-80]
MASLQELELDEISEWPLLPQLVVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
MASLQELELDEISEWPLLPQLVVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=159679 BBB50_RS01640 WP_000157690.1 312564..313154(+) (pilO) [Vibrio cholerae 2740-80]
ATGGCTAGTCTACAAGAGCTAGAACTGGATGAAATTAGTGAATGGCCGCTGCTGCCTCAGTTGGTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCGACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATCCAAGCTCAGTTGGACGAG
CTCAAAGAGCGTTACGATTTTTTACTGCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGGAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGTGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTCAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
ATGGCTAGTCTACAAGAGCTAGAACTGGATGAAATTAGTGAATGGCCGCTGCTGCCTCAGTTGGTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCGACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATCCAAGCTCAGTTGGACGAG
CTCAAAGAGCGTTACGATTTTTTACTGCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGGAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGTGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTCAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| pilO | Vibrio campbellii strain DS40M4 |
71.958 |
96.429 |
0.694 |