Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC37_RS00795 Genome accession   NZ_CP016321
Coordinates   175187..175861 (+) Length   224 a.a.
NCBI ID   WP_017789148.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 170187..180861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC37_RS00775 (FORC37_0140) - 170234..171172 (-) 939 WP_039468941.1 Kdo(2)-lipid IV(A) acyltransferase -
  FORC37_RS00780 (FORC37_0141) slmA 171176..171766 (-) 591 WP_011078898.1 nucleoid occlusion factor SlmA -
  FORC37_RS00785 (FORC37_0142) coaBC 171917..173122 (-) 1206 WP_088427366.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  FORC37_RS00790 (FORC37_0143) - 173406..175073 (+) 1668 WP_088427367.1 methyl-accepting chemotaxis protein -
  FORC37_RS00795 (FORC37_0144) radC 175187..175861 (+) 675 WP_017789148.1 RadC family protein Machinery gene
  FORC37_RS00800 (FORC37_0145) rpmB 176173..176409 (+) 237 WP_011078894.1 50S ribosomal protein L28 -
  FORC37_RS00805 (FORC37_0146) rpmG 176425..176595 (+) 171 WP_011078893.1 50S ribosomal protein L33 -
  FORC37_RS00810 (FORC37_0147) - 176828..177325 (+) 498 WP_088427368.1 hypothetical protein -
  FORC37_RS00815 (FORC37_0148) mutM 177355..178164 (+) 810 WP_088427369.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  FORC37_RS00820 (FORC37_0149) - 178312..180288 (+) 1977 WP_039549773.1 LTA synthase family protein -
  FORC37_RS00825 (FORC37_0150) coaD 180363..180857 (-) 495 WP_017789152.1 pantetheine-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25341.01 Da        Isoelectric Point: 7.1311

>NTDB_id=159592 FORC37_RS00795 WP_017789148.1 175187..175861(+) (radC) [Vibrio vulnificus strain FORC_037]
MSLKNLPSESMPREKLLQRGPESLSDAELLAIFLRTGTQGMNVIELADFLLRDFGSLRKLFSADEQSFCRHKGLGQAKYV
QLQAVLEMTQRYLAETLQRGDALTSPQHTKLYLSSMLRDRHREAFYVLFLDNQNRVIKDEVMFEGTIDAASVYPREVVKR
ALHYNAAALILAHNHPSGVAEPSQADRRITRRLSDALGLVDIRVLDHFVVGDGEVVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=159592 FORC37_RS00795 WP_017789148.1 175187..175861(+) (radC) [Vibrio vulnificus strain FORC_037]
ATGAGCCTAAAAAACCTGCCTAGTGAATCCATGCCAAGGGAAAAGTTGCTTCAGCGTGGGCCTGAGTCTTTGTCCGATGC
CGAGTTACTCGCCATCTTTTTAAGAACAGGCACACAAGGAATGAACGTGATTGAACTTGCCGATTTTTTATTGCGAGACT
TTGGTTCGCTGAGAAAACTGTTTTCTGCCGATGAACAGAGCTTTTGTCGTCACAAAGGATTGGGGCAGGCAAAATACGTT
CAATTACAAGCTGTTTTGGAAATGACGCAACGTTATTTGGCCGAAACATTGCAACGTGGTGATGCGCTCACCAGTCCACA
GCATACTAAGCTTTATCTCTCTTCCATGTTGCGCGATCGCCATCGAGAAGCGTTTTACGTGTTGTTCCTCGATAATCAAA
ATCGTGTCATTAAAGATGAGGTGATGTTTGAAGGCACCATCGATGCCGCCTCGGTCTATCCTCGGGAAGTCGTTAAAAGA
GCCTTACACTATAATGCCGCCGCTTTAATACTGGCGCACAACCATCCCTCAGGAGTAGCAGAGCCAAGCCAAGCAGATCG
GCGAATTACTCGACGTTTGAGTGACGCATTGGGCTTAGTGGATATACGGGTATTGGACCACTTTGTTGTCGGCGATGGAG
AGGTAGTGTCATTCGCGGAAAGAGGCTGGATTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(4-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.241

96.429

0.513
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.946

100

0.379