Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SIDU_RS14895 Genome accession   NZ_CP013070
Coordinates   3064301..3064858 (-) Length   185 a.a.
NCBI ID   WP_007686985.1    Uniprot ID   A0A4Q4J2S9
Organism   Sphingobium indicum B90A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3059301..3069858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIDU_RS14875 (SIDU_14595) - 3059346..3059765 (-) 420 WP_007686977.1 GtrA family protein -
  SIDU_RS14880 (SIDU_14600) - 3059771..3061297 (-) 1527 WP_007686979.1 NAD(P)/FAD-dependent oxidoreductase -
  SIDU_RS14885 (SIDU_14605) - 3061443..3061784 (-) 342 WP_007686981.1 UrcA family protein -
  SIDU_RS14890 (SIDU_14610) purH 3062353..3063942 (-) 1590 WP_007686983.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  SIDU_RS14895 (SIDU_14615) ssb 3064301..3064858 (-) 558 WP_007686985.1 single-stranded DNA-binding protein Machinery gene
  SIDU_RS14900 (SIDU_14620) - 3064885..3066744 (-) 1860 WP_007686987.1 ferrous iron transporter B -
  SIDU_RS14905 (SIDU_14625) - 3066741..3066998 (-) 258 WP_007686988.1 FeoA family protein -
  SIDU_RS14910 (SIDU_14630) - 3067087..3067731 (-) 645 WP_007686990.1 COQ9 family protein -
  SIDU_RS14915 (SIDU_14635) - 3067935..3069017 (+) 1083 WP_007686992.1 alkene reductase -
  SIDU_RS14920 (SIDU_14640) ribH 3069072..3069494 (-) 423 WP_007686994.1 6,7-dimethyl-8-ribityllumazine synthase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 18999.67 Da        Isoelectric Point: 5.0179

>NTDB_id=159563 SIDU_RS14895 WP_007686985.1 3064301..3064858(-) (ssb) [Sphingobium indicum B90A]
MAGSVNKVILVGNLGADPEVKSFQNGGKVCNLRIATSESWKDRMSGERKERTEWHSVAIFSEGLAGVAERFLRKGSKVYL
EGQLRTRKWQDQSGNDRYTTEVVLQGPGAVLTMLDGAPGGGGQGGGGRSQGGGDWSGGSSGFGGGDYDDFGGGGFGGGSG
RSSGGGRGSAGGPNFDNDLDDEVPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=159563 SIDU_RS14895 WP_007686985.1 3064301..3064858(-) (ssb) [Sphingobium indicum B90A]
ATGGCGGGTTCGGTCAACAAGGTCATTCTGGTCGGCAATCTGGGCGCCGACCCGGAGGTCAAGAGCTTTCAGAATGGCGG
GAAGGTGTGCAACCTGCGGATCGCGACCTCCGAAAGCTGGAAGGACCGCATGTCGGGCGAGCGCAAGGAGCGCACCGAAT
GGCACAGCGTGGCGATCTTCTCCGAAGGGCTGGCGGGCGTGGCCGAACGCTTCCTGCGCAAGGGGTCGAAAGTCTATCTG
GAGGGCCAGCTCCGCACCCGCAAATGGCAGGACCAGTCGGGCAATGACCGCTACACCACCGAAGTGGTGCTGCAGGGTCC
GGGCGCTGTGCTGACCATGCTTGACGGCGCGCCGGGCGGCGGCGGCCAGGGCGGCGGTGGCCGCTCCCAGGGCGGCGGCG
ACTGGAGCGGCGGGTCGAGCGGCTTTGGCGGCGGCGATTATGACGATTTCGGCGGCGGCGGCTTCGGCGGCGGTTCCGGC
CGCTCCTCCGGCGGCGGGCGCGGCAGCGCGGGCGGGCCGAATTTCGACAATGACCTGGACGATGAAGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q4J2S9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.492
  ssb Vibrio cholerae strain A1552

45.652

99.459

0.454

Multiple sequence alignment