Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AR446_RS05040 Genome accession   NZ_CP013034
Coordinates   982046..982816 (-) Length   256 a.a.
NCBI ID   WP_002776372.1    Uniprot ID   A0A3H9IIK0
Organism   Campylobacter coli strain HC2-48     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 977046..987816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AR446_RS05010 (AR446_05010) aspS 977182..978933 (+) 1752 WP_002784258.1 aspartate--tRNA ligase -
  AR446_RS05015 (AR446_05015) - 978930..979505 (+) 576 WP_002776379.1 adenylate kinase -
  AR446_RS05020 (AR446_05020) ppa 979515..980033 (+) 519 WP_002799870.1 inorganic diphosphatase -
  AR446_RS05025 (AR446_05025) msrA 980081..980581 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AR446_RS05030 (AR446_05030) - 980804..981658 (-) 855 WP_370300696.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AR446_RS05035 (AR446_05035) ruvX 981669..982049 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  AR446_RS05040 (AR446_05040) dprA 982046..982816 (-) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  AR446_RS05045 (AR446_05045) - 982806..983858 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  AR446_RS05050 (AR446_05050) ilvC 983861..984883 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  AR446_RS05055 (AR446_05055) - 985006..986940 (+) 1935 WP_002776352.1 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28943.38 Da        Isoelectric Point: 5.2618

>NTDB_id=159433 AR446_RS05040 WP_002776372.1 982046..982816(-) (dprA) [Campylobacter coli strain HC2-48]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPNTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYREKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=159433 AR446_RS05040 WP_002776372.1 982046..982816(-) (dprA) [Campylobacter coli strain HC2-48]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAACACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATAGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3H9IIK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.5

93.75

0.445

Multiple sequence alignment