Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   AR446_RS04865 Genome accession   NZ_CP013034
Coordinates   950919..951365 (-) Length   148 a.a.
NCBI ID   WP_002799883.1    Uniprot ID   -
Organism   Campylobacter coli strain HC2-48     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 945919..956365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AR446_RS04850 (AR446_04850) - 947725..948333 (+) 609 WP_002781606.1 gamma-glutamyl-CDP-amidate hydrolase -
  AR446_RS04855 (AR446_04855) - 948330..949100 (+) 771 WP_002781608.1 sugar phosphate nucleotidyltransferase -
  AR446_RS04860 (AR446_04860) - 949084..950922 (-) 1839 WP_002804655.1 primosomal protein N' -
  AR446_RS04865 (AR446_04865) Cj0683 950919..951365 (-) 447 WP_002799883.1 type II secretion system protein Machinery gene
  AR446_RS04870 (AR446_04870) - 951362..951607 (-) 246 WP_002776428.1 hypothetical protein -
  AR446_RS04875 (AR446_04875) - 951597..951827 (-) 231 WP_002776426.1 hypothetical protein -
  AR446_RS04880 (AR446_04880) uvrB 951981..953954 (+) 1974 WP_002776424.1 excinuclease ABC subunit UvrB -
  AR446_RS04885 (AR446_04885) - 953989..955413 (-) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17304.16 Da        Isoelectric Point: 8.4538

>NTDB_id=159432 AR446_RS04865 WP_002799883.1 950919..951365(-) (Cj0683) [Campylobacter coli strain HC2-48]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEMLNSALSLMRTQTELKQISSFSPNLDEAKINTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWVDFFYNADFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=159432 AR446_RS04865 WP_002799883.1 950919..951365(-) (Cj0683) [Campylobacter coli strain HC2-48]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTGGCAAGTTTAAGCTTCTCTTT
TGCCAATCAAAATAAAAACGATGCGAAATTATTAAAATTGAAAATAGATTATGAAATGCTAAATTCAGCCCTGTCTCTTA
TGCGCACTCAGACTGAACTTAAGCAAATCAGTTCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAACACTCAAAAAGAA
AAACTTTTTTACTGCCAAACTAGTCAAAATTGCACCTATTCTTTGCTTCATACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGGTTGATTTTTTTTATAATGCTGATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTATTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.108

100

0.581

Multiple sequence alignment