Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   AR446_RS00950 Genome accession   NZ_CP013034
Coordinates   179233..179829 (+) Length   198 a.a.
NCBI ID   WP_002804867.1    Uniprot ID   -
Organism   Campylobacter coli strain HC2-48     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 174233..184829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AR446_RS00935 (AR446_00935) ctsR 176940..177251 (+) 312 WP_002804858.1 hypothetical protein Machinery gene
  AR446_RS00940 (AR446_00940) ctsD 177229..178647 (+) 1419 WP_002804861.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AR446_RS00945 (AR446_00945) ctsP 178640..179236 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  AR446_RS00950 (AR446_00950) ctsX 179233..179829 (+) 597 WP_002804867.1 CDC27 family protein Machinery gene
  AR446_RS00955 (AR446_00955) ctsE 179822..181384 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  AR446_RS00960 (AR446_00960) ctsF 181371..182546 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  AR446_RS00965 (AR446_00965) - 182543..183307 (-) 765 WP_002784060.1 TSUP family transporter -
  AR446_RS00970 (AR446_00970) - 183310..184074 (-) 765 WP_002781156.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23788.26 Da        Isoelectric Point: 5.2295

>NTDB_id=159418 AR446_RS00950 WP_002804867.1 179233..179829(+) (ctsX) [Campylobacter coli strain HC2-48]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIVCMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=159418 AR446_RS00950 WP_002804867.1 179233..179829(+) (ctsX) [Campylobacter coli strain HC2-48]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGTATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAAATAGATGATTGA

Domains

Predicted by InterproScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

52.332

97.475

0.51

Multiple sequence alignment