Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   AR446_RS00935 Genome accession   NZ_CP013034
Coordinates   176940..177251 (+) Length   103 a.a.
NCBI ID   WP_002804858.1    Uniprot ID   -
Organism   Campylobacter coli strain HC2-48     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 171940..182251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AR446_RS00925 (AR446_00925) - 172614..173252 (+) 639 WP_002804856.1 HAD family hydrolase -
  AR446_RS00930 (AR446_00930) nifJ 173356..176916 (+) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AR446_RS00935 (AR446_00935) ctsR 176940..177251 (+) 312 WP_002804858.1 hypothetical protein Machinery gene
  AR446_RS00940 (AR446_00940) ctsD 177229..178647 (+) 1419 WP_002804861.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AR446_RS00945 (AR446_00945) ctsP 178640..179236 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  AR446_RS00950 (AR446_00950) ctsX 179233..179829 (+) 597 WP_002804867.1 CDC27 family protein Machinery gene
  AR446_RS00955 (AR446_00955) ctsE 179822..181384 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12239.28 Da        Isoelectric Point: 6.3244

>NTDB_id=159415 AR446_RS00935 WP_002804858.1 176940..177251(+) (ctsR) [Campylobacter coli strain HC2-48]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDIATKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=159415 AR446_RS00935 WP_002804858.1 176940..177251(+) (ctsR) [Campylobacter coli strain HC2-48]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTGCTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment