Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AR543_RS21705 Genome accession   NZ_CP013023
Coordinates   5066611..5067570 (-) Length   319 a.a.
NCBI ID   WP_060536392.1    Uniprot ID   A0A172ZLA6
Organism   Paenibacillus bovis strain BD3526     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5061611..5072570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AR543_RS21685 (AR543_21520) - 5062351..5063292 (-) 942 WP_060536388.1 carbohydrate ABC transporter permease -
  AR543_RS21690 (AR543_21525) - 5063667..5064620 (-) 954 WP_060536389.1 siderophore ABC transporter substrate-binding protein -
  AR543_RS21695 (AR543_21530) - 5064834..5065592 (-) 759 WP_060536390.1 ABC transporter ATP-binding protein -
  AR543_RS21700 (AR543_21535) - 5065674..5066627 (-) 954 WP_060536391.1 iron chelate uptake ABC transporter family permease subunit -
  AR543_RS21705 (AR543_21540) ceuB 5066611..5067570 (-) 960 WP_060536392.1 ABC transporter permease Machinery gene
  AR543_RS21710 (AR543_21545) - 5067853..5068110 (-) 258 WP_060536393.1 YqkE family protein -
  AR543_RS21715 (AR543_21550) - 5068403..5069734 (-) 1332 WP_060536394.1 hemolysin family protein -
  AR543_RS21720 (AR543_21555) - 5070209..5070712 (-) 504 WP_060536395.1 hypothetical protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35252.38 Da        Isoelectric Point: 10.0544

>NTDB_id=159344 AR543_RS21705 WP_060536392.1 5066611..5067570(-) (ceuB) [Paenibacillus bovis strain BD3526]
MKLRTLIVLFALLAITSLFVGVKDLRPWEIFSWTAEQQQVFWISRIPRLISIIIAGACMSIAGLIMQQLSRNKFVSPTTA
GTIEWTRLGILVSMMLFAAAAPLVKMSIAFVFALGGTFLFMQVLNRIKFKDTIFIPLVGLMLGNVVSSIATYFAYRYDLV
QNISSWLQGNFSLVLQGRYELLYISVPLVIIAYIYANRFTLAGMGEDFATNLGLNYKRVVTLGLIIVSLISASVVLTVGS
IPYLGLIIPNIVSIYRGDHLKKSLMHTALLGASFVLLCDVLGRIIIYPYEIPIGVMVGVIGSGIFLYLLLRRDAYAAAS

Nucleotide


Download         Length: 960 bp        

>NTDB_id=159344 AR543_RS21705 WP_060536392.1 5066611..5067570(-) (ceuB) [Paenibacillus bovis strain BD3526]
ATGAAATTGAGAACACTTATTGTACTGTTTGCTCTGCTGGCGATCACCTCTCTATTTGTAGGAGTAAAGGACCTTCGTCC
ATGGGAGATATTCAGCTGGACAGCTGAACAGCAGCAGGTATTCTGGATTAGCCGGATACCGAGACTGATCAGTATTATTA
TCGCCGGTGCGTGTATGAGTATTGCCGGACTGATTATGCAGCAGCTCAGCCGCAACAAATTTGTCTCTCCGACAACAGCC
GGAACGATCGAGTGGACAAGGCTCGGCATTCTCGTCTCGATGATGCTGTTCGCAGCTGCGGCACCACTGGTCAAGATGAG
TATTGCGTTTGTATTTGCACTGGGTGGTACTTTCTTGTTCATGCAAGTGCTGAATCGGATCAAGTTCAAGGATACGATAT
TTATCCCGCTGGTAGGACTGATGCTCGGCAATGTGGTTAGCTCGATCGCTACTTATTTTGCCTATCGGTACGATCTGGTA
CAGAATATCTCCTCCTGGCTACAGGGTAATTTCTCGCTTGTGCTGCAGGGGCGATATGAGCTGCTGTATATCAGCGTGCC
GCTCGTGATTATCGCATACATCTATGCCAATCGGTTTACGCTGGCAGGTATGGGGGAGGATTTTGCCACCAATCTGGGAC
TGAATTACAAAAGGGTAGTCACGCTCGGGCTGATTATTGTCTCGCTGATCTCGGCTTCGGTCGTACTGACGGTTGGATCG
ATTCCTTATCTGGGACTGATTATTCCGAATATCGTCAGCATCTATCGCGGCGATCATCTCAAAAAAAGCCTAATGCATAC
CGCACTGCTCGGCGCAAGCTTCGTCCTGCTGTGCGATGTACTGGGACGGATCATTATTTACCCTTACGAAATTCCGATCG
GAGTGATGGTAGGTGTCATTGGCAGCGGCATTTTCCTGTATCTGTTGTTAAGGAGAGATGCGTATGCGGCTGCAAGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172ZLA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.949

99.06

0.505

Multiple sequence alignment