Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   APY29_RS05930 Genome accession   NZ_CP013004
Coordinates   1331666..1333120 (-) Length   484 a.a.
NCBI ID   WP_033836745.1    Uniprot ID   -
Organism   Xanthomonas citri pv. malvacearum strain XcmH1005     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1326666..1338120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APY29_RS05905 (APY29_05635) pilC 1326714..1327973 (-) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene
  APY29_RS05910 (APY29_05640) comP 1328318..1328746 (+) 429 WP_005921364.1 pilin Machinery gene
  APY29_RS25500 pilA2 1328843..1329256 (+) 414 WP_005921365.1 pilin Machinery gene
  APY29_RS05920 (APY29_05645) pilB 1329298..1331034 (+) 1737 WP_033836748.1 type IV-A pilus assembly ATPase PilB Machinery gene
  APY29_RS05925 (APY29_05650) - 1331312..1331479 (+) 168 WP_033836746.1 hypothetical protein -
  APY29_RS05930 (APY29_05655) pilR 1331666..1333120 (-) 1455 WP_033836745.1 sigma-54 dependent transcriptional regulator Regulator
  APY29_RS05935 (APY29_05665) - 1333387..1335000 (-) 1614 WP_005921369.1 HAMP domain-containing sensor histidine kinase -
  APY29_RS05940 (APY29_05670) sucC 1335232..1336401 (+) 1170 WP_005915812.1 ADP-forming succinate--CoA ligase subunit beta -
  APY29_RS05945 (APY29_05675) sucD 1336426..1337301 (+) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  APY29_RS24850 (APY29_05680) - 1337445..1337666 (+) 222 WP_223304344.1 hypothetical protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52518.37 Da        Isoelectric Point: 6.8289

>NTDB_id=159097 APY29_RS05930 WP_033836745.1 1331666..1333120(-) (pilR) [Xanthomonas citri pv. malvacearum strain XcmH1005]
MGRDLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPLPPPEQASR
LLGDSSAMEILRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=159097 APY29_RS05930 WP_033836745.1 1331666..1333120(-) (pilR) [Xanthomonas citri pv. malvacearum strain XcmH1005]
GTGGGCCGCGACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGTTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACTGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTACCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTAATTGAGCTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGACGCCTTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATTAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGGGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
CGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Response regulator receiver domain (Response_reg)

(28-134)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.043

95.041

0.599
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment