Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SAST42_RS02550 Genome accession   NZ_CP012976
Coordinates   532121..532690 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST20130942     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 527121..537690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAST42_RS02525 (SAST42_03298) cysE 528334..528981 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  SAST42_RS02530 (SAST42_00467) cysS 528965..530365 (+) 1401 WP_000631974.1 cysteine--tRNA ligase -
  SAST42_RS02535 (SAST42_00468) - 530358..530762 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  SAST42_RS02540 (SAST42_00469) rlmB 530770..531516 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SAST42_RS02545 (SAST42_00470) - 531516..532040 (+) 525 WP_000664738.1 NYN domain-containing protein -
  SAST42_RS02550 (SAST42_00471) sigH 532121..532690 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  SAST42_RS14125 rpmG 532805..532948 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  SAST42_RS02555 (SAST42_02986) secE 533004..533186 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SAST42_RS02560 (SAST42_00473) nusG 533199..533747 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SAST42_RS02565 (SAST42_00474) rplK 533928..534350 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SAST42_RS02570 (SAST42_00475) rplA 534558..535250 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SAST42_RS02575 (SAST42_00476) rplJ 535522..536022 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  SAST42_RS02580 (SAST42_00477) rplL 536065..536433 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SAST42_RS02585 (SAST42_00478) - 536608..537216 (+) 609 WP_031918733.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=158804 SAST42_RS02550 WP_000872873.1 532121..532690(+) (sigH) [Staphylococcus aureus strain ST20130942]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=158804 SAST42_RS02550 WP_000872873.1 532121..532690(+) (sigH) [Staphylococcus aureus strain ST20130942]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment