Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SAST43_RS10515 Genome accession   NZ_CP012974
Coordinates   2089017..2089412 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST20130943     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2084017..2094412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAST43_RS10490 (SAST43_03464) thiE 2084617..2085258 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  SAST43_RS10495 (SAST43_02061) thiM 2085260..2086051 (-) 792 WP_001108489.1 hydroxyethylthiazole kinase -
  SAST43_RS10500 (SAST43_02062) thiD 2086035..2086865 (-) 831 WP_000594967.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SAST43_RS10505 (SAST43_02063) tenA 2086858..2087547 (-) 690 WP_000396067.1 thiaminase II -
  SAST43_RS10510 (SAST43_02065) sceD 2087933..2088628 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  SAST43_RS10515 (SAST43_02066) ssb 2089017..2089412 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  SAST43_RS10520 (SAST43_02067) - 2089606..2090046 (+) 441 WP_000846746.1 YwpF-like family protein -
  SAST43_RS10525 (SAST43_02068) fabZ 2090105..2090545 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SAST43_RS10530 (SAST43_02069) murA 2090579..2091844 (-) 1266 WP_000358010.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SAST43_RS10535 (SAST43_02071) - 2091955..2092188 (-) 234 WP_000384524.1 DUF1146 family protein -
  SAST43_RS10540 - 2092320..2092412 (-) 93 WP_031824610.1 hypothetical protein -
  SAST43_RS10545 (SAST43_02072) - 2092748..2093152 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=158794 SAST43_RS10515 WP_000932694.1 2089017..2089412(-) (ssb) [Staphylococcus aureus strain ST20130943]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=158794 SAST43_RS10515 WP_000932694.1 2089017..2089412(-) (ssb) [Staphylococcus aureus strain ST20130943]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment