Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A9Y61_RS02410 Genome accession   NZ_CP016017
Coordinates   450590..451198 (+) Length   202 a.a.
NCBI ID   WP_047920987.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 34769     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445590..456198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9Y61_RS02385 (A9Y61_02385) - 445883..446464 (-) 582 WP_033910016.1 superoxide dismutase -
  A9Y61_RS02390 (A9Y61_02390) dnaB 446627..448033 (+) 1407 WP_047920786.1 replicative DNA helicase -
  A9Y61_RS02395 (A9Y61_02395) pilH 448341..449006 (+) 666 WP_047920982.1 GspH/FimT family pseudopilin Machinery gene
  A9Y61_RS02400 (A9Y61_02400) pilV/pilI 449038..449646 (+) 609 WP_047920984.1 type IV pilus modification protein PilV Regulator
  A9Y61_RS02405 (A9Y61_02405) pilJ 449643..450611 (+) 969 WP_047920986.1 PilW family protein Machinery gene
  A9Y61_RS02410 (A9Y61_02410) pilK 450590..451198 (+) 609 WP_047920987.1 pilus assembly PilX family protein Machinery gene
  A9Y61_RS02415 (A9Y61_02415) pilL 451200..451673 (+) 474 WP_170959666.1 PilX family type IV pilin Machinery gene
  A9Y61_RS02420 (A9Y61_02420) - 451743..452051 (-) 309 WP_047920338.1 AzlD family protein -
  A9Y61_RS13755 - 452048..452758 (-) 711 Protein_457 AzlC family ABC transporter permease -
  A9Y61_RS02430 (A9Y61_02430) dut 452924..453376 (+) 453 WP_010359930.1 dUTP diphosphatase -
  A9Y61_RS02435 (A9Y61_02435) dapC 453454..454641 (+) 1188 WP_010359932.1 succinyldiaminopimelate transaminase -
  A9Y61_RS02440 (A9Y61_02440) yaaA 454952..455731 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21896.78 Da        Isoelectric Point: 8.0870

>NTDB_id=158710 A9Y61_RS02410 WP_047920987.1 450590..451198(+) (pilK) [Neisseria gonorrhoeae strain 34769]
MRKQNALTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNANEESFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTASVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=158710 A9Y61_RS02410 WP_047920987.1 450590..451198(+) (pilK) [Neisseria gonorrhoeae strain 34769]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTACGGACAAATAATGCTAATGA
AGAGTCTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTGGCA
AAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGCACGGCAAGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.074

100

0.955

Multiple sequence alignment