Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AOB58_RS13030 | Genome accession | NZ_CP012968 |
| Coordinates | 2697129..2697548 (+) | Length | 139 a.a. |
| NCBI ID | WP_064783563.1 | Uniprot ID | - |
| Organism | Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2692129..2702548
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOB58_RS13000 (AOB58_2644) | atpD | 2692166..2693578 (+) | 1413 | WP_021339775.1 | F0F1 ATP synthase subunit beta | - |
| AOB58_RS13005 (AOB58_2645) | - | 2693598..2694002 (+) | 405 | WP_002507082.1 | F0F1 ATP synthase subunit epsilon | - |
| AOB58_RS13010 (AOB58_2646) | - | 2694326..2694559 (+) | 234 | WP_064783561.1 | DUF1146 family protein | - |
| AOB58_RS13015 (AOB58_2647) | murA | 2694666..2695931 (+) | 1266 | WP_021339774.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| AOB58_RS13020 (AOB58_2648) | fabZ | 2695989..2696429 (+) | 441 | WP_064783562.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| AOB58_RS13025 (AOB58_2649) | - | 2696498..2696938 (-) | 441 | WP_002507086.1 | YwpF-like family protein | - |
| AOB58_RS13030 (AOB58_2650) | ssb | 2697129..2697548 (+) | 420 | WP_064783563.1 | single-stranded DNA-binding protein | Machinery gene |
| AOB58_RS13035 (AOB58_2651) | - | 2698032..2698712 (+) | 681 | WP_002507088.1 | transglycosylase family protein | - |
| AOB58_RS13040 (AOB58_2652) | tenA | 2699105..2699794 (+) | 690 | WP_064783564.1 | thiaminase II | - |
| AOB58_RS13045 (AOB58_2653) | thiD | 2699787..2700608 (+) | 822 | WP_021339939.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| AOB58_RS13050 (AOB58_2654) | thiM | 2700601..2701392 (+) | 792 | WP_064783598.1 | hydroxyethylthiazole kinase | - |
| AOB58_RS13055 (AOB58_2655) | thiE | 2701392..2702030 (+) | 639 | WP_064783565.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 16317.53 Da Isoelectric Point: 4.7353
>NTDB_id=158655 AOB58_RS13030 WP_064783563.1 2697129..2697548(+) (ssb) [Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province]
MINNIVIVGRLTKDPKIYEKEGKKLATFCVAVNRNYKDKDQNTVCDYLYCKAFDKIADNIEKYINQGSLVGITGQMQSRK
FEKEGQMHFVSELYIETIKFMSPRTKNETDELFEPFPLEQDHESFNEINIQENDIYEIV
MINNIVIVGRLTKDPKIYEKEGKKLATFCVAVNRNYKDKDQNTVCDYLYCKAFDKIADNIEKYINQGSLVGITGQMQSRK
FEKEGQMHFVSELYIETIKFMSPRTKNETDELFEPFPLEQDHESFNEINIQENDIYEIV
Nucleotide
Download Length: 420 bp
>NTDB_id=158655 AOB58_RS13030 WP_064783563.1 2697129..2697548(+) (ssb) [Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province]
ATGATAAATAACATCGTCATTGTAGGACGATTAACAAAAGATCCCAAAATTTATGAAAAGGAGGGGAAGAAGTTAGCTAC
CTTTTGTGTAGCAGTAAATAGAAATTATAAAGATAAAGATCAAAATACAGTCTGTGATTATTTGTATTGTAAAGCATTTG
ATAAAATTGCTGACAATATTGAAAAGTATATCAATCAAGGATCACTTGTAGGTATTACTGGACAAATGCAATCACGTAAA
TTTGAAAAAGAAGGACAGATGCATTTTGTATCAGAACTTTATATCGAAACAATTAAATTCATGTCTCCACGAACTAAAAA
TGAAACGGATGAACTTTTTGAACCATTCCCATTAGAGCAAGATCATGAATCATTCAACGAAATTAATATTCAAGAAAATG
ATATATACGAAATTGTATAA
ATGATAAATAACATCGTCATTGTAGGACGATTAACAAAAGATCCCAAAATTTATGAAAAGGAGGGGAAGAAGTTAGCTAC
CTTTTGTGTAGCAGTAAATAGAAATTATAAAGATAAAGATCAAAATACAGTCTGTGATTATTTGTATTGTAAAGCATTTG
ATAAAATTGCTGACAATATTGAAAAGTATATCAATCAAGGATCACTTGTAGGTATTACTGGACAAATGCAATCACGTAAA
TTTGAAAAAGAAGGACAGATGCATTTTGTATCAGAACTTTATATCGAAACAATTAAATTCATGTCTCCACGAACTAAAAA
TGAAACGGATGAACTTTTTGAACCATTCCCATTAGAGCAAGATCATGAATCATTCAACGAAATTAATATTCAAGAAAATG
ATATATACGAAATTGTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
60.87 |
99.281 |
0.604 |
| ssb | Staphylococcus aureus MW2 |
60.145 |
99.281 |
0.597 |