Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACT74_RS09545 Genome accession   NZ_CP012958
Coordinates   1968831..1969889 (+) Length   352 a.a.
NCBI ID   WP_005544399.1    Uniprot ID   A0A5D0EHN3
Organism   Aggregatibacter actinomycetemcomitans strain VT1169     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1963831..1974889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACT74_RS09515 (ACT74_09510) - 1963922..1964923 (-) 1002 WP_005589605.1 type IV secretion system protein -
  ACT74_RS09520 (ACT74_09515) - 1964933..1965160 (-) 228 WP_061870015.1 EexN family lipoprotein -
  ACT74_RS09525 (ACT74_09520) - 1965174..1965905 (-) 732 WP_061870016.1 type IV secretion system protein -
  ACT74_RS11340 (ACT74_09525) - 1965916..1966998 (-) 1083 WP_231098012.1 hypothetical protein -
  ACT74_RS09535 (ACT74_09530) - 1966979..1968683 (+) 1705 Protein_1887 ABC transporter ATP-binding protein -
  ACT74_RS09545 (ACT74_09540) recA 1968831..1969889 (+) 1059 WP_005544399.1 recombinase RecA Machinery gene
  ACT74_RS09550 (ACT74_09545) recX 1969971..1970429 (+) 459 WP_005548507.1 recombination regulator RecX -
  ACT74_RS09555 (ACT74_09550) - 1970506..1970895 (+) 390 WP_061870017.1 RidA family protein -
  ACT74_RS09560 (ACT74_09555) tkt 1970967..1972964 (-) 1998 WP_014167509.1 transketolase -
  ACT74_RS09565 (ACT74_09560) tal 1973097..1974050 (-) 954 WP_005571405.1 transaldolase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37977.47 Da        Isoelectric Point: 4.8931

>NTDB_id=158592 ACT74_RS09545 WP_005544399.1 1968831..1969889(+) (recA) [Aggregatibacter actinomycetemcomitans strain VT1169]
MATQEEKQKALDAALGQIEKQFGKGAIMKLGDSQKLDIEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAEAQKTGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDM
GDSHMGLQARLMSQALRKLTSQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGSIKEGDEVIG
NETRVKVVKNKVAPPFRQVDFQILYGEGISKESELIELGVKHKLISKAGAWYAYQNEKIGQGKTNAMKWLKDNPEQAKFI
ESTLRDELLAHPESAITAEVENEAGNGEGDFE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=158592 ACT74_RS09545 WP_005544399.1 1968831..1969889(+) (recA) [Aggregatibacter actinomycetemcomitans strain VT1169]
ATGGCAACTCAAGAAGAAAAGCAAAAAGCACTCGACGCGGCGTTAGGTCAAATTGAAAAACAATTTGGTAAAGGCGCCAT
CATGAAACTCGGCGACAGCCAAAAACTGGACATTGAAGCGATTTCCACCGGTTCTTTCGGTCTTGACCTAGCACTAGGCA
TCGGCGGTTTGCCGATGGGGCGTATCGTGGAGATTTTCGGGCCGGAATCTTCAGGTAAAACTACTTTAACCCTTTCTGTG
ATTGCGGAAGCGCAAAAAACCGGCAAAACCTGTGCCTTTATTGATGCGGAACATGCTTTAGACCCGATTTATGCCTCCAA
ACTCGGCGTGGATGTAAAAGAACTTTTAGTTTCCCAGCCGGACAACGGCGAACAGGCGCTGGAAATTTGTGATGCGTTGG
TGCGTTCCGGTGCGGTGGATGTAATTATCGTTGACTCCGTTGCCGCCTTAACGCCGAAAGCGGAAATTGAAGGCGACATG
GGCGATTCCCACATGGGATTACAAGCGCGTTTAATGTCTCAAGCATTGCGTAAACTTACCAGCCAAATTAAAAACGCCAA
CTGCTTGGTGATTTTCATCAACCAAATTCGGATGAAAATCGGCGTGATGTTCGGTAATCCGGAAACCACCACCGGCGGTA
ACGCGTTGAAATTCTATGCCTCGGTGCGTTTGGATATTCGCCGCGTGGGTTCTATCAAAGAGGGTGATGAAGTTATCGGT
AATGAAACTCGTGTGAAAGTGGTGAAAAACAAAGTGGCGCCACCGTTCCGCCAAGTGGATTTCCAAATTCTGTACGGCGA
AGGTATTTCCAAAGAAAGCGAACTGATTGAGCTCGGCGTGAAACATAAACTCATCAGCAAAGCAGGTGCGTGGTACGCTT
ACCAAAACGAGAAAATCGGTCAGGGCAAAACCAATGCTATGAAATGGTTGAAAGACAATCCTGAACAAGCCAAATTTATC
GAAAGCACCTTGCGTGATGAATTGTTGGCACATCCGGAATCTGCCATCACTGCGGAAGTAGAAAACGAAGCGGGTAATGG
CGAAGGCGATTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D0EHN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

75

98.864

0.741
  recA Vibrio cholerae strain A1552

75.758

93.75

0.71
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.758

93.75

0.71
  recA Pseudomonas stutzeri DSM 10701

76.308

92.33

0.705
  recA Neisseria gonorrhoeae strain FA1090

73.292

91.477

0.67
  recA Neisseria gonorrhoeae MS11

73.292

91.477

0.67
  recA Neisseria gonorrhoeae MS11

73.292

91.477

0.67
  recA Acinetobacter baylyi ADP1

69.322

96.307

0.668
  recA Ralstonia pseudosolanacearum GMI1000

70.552

92.614

0.653
  recA Acinetobacter baumannii D1279779

70.769

92.33

0.653
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.264

94.602

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.615

92.33

0.597
  recA Helicobacter pylori 26695

62.575

94.886

0.594
  recA Helicobacter pylori strain NCTC11637

62.575

94.886

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

63.354

91.477

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.856

92.898

0.565
  recA Streptococcus mutans UA159

60

92.33

0.554
  recA Streptococcus mitis NCTC 12261

60.185

92.045

0.554
  recA Streptococcus mitis SK321

60.185

92.045

0.554
  recA Streptococcus pneumoniae D39

59.327

92.898

0.551
  recA Streptococcus pneumoniae TIGR4

59.327

92.898

0.551
  recA Streptococcus pneumoniae Rx1

59.327

92.898

0.551
  recA Streptococcus pneumoniae R6

59.327

92.898

0.551
  recA Streptococcus pyogenes NZ131

58.769

92.33

0.543
  recA Latilactobacillus sakei subsp. sakei 23K

60.323

88.068

0.531
  recA Lactococcus lactis subsp. cremoris KW2

56.173

92.045

0.517

Multiple sequence alignment