Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   ACT74_RS05940 Genome accession   NZ_CP012958
Coordinates   1276685..1276987 (-) Length   100 a.a.
NCBI ID   WP_005545595.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain VT1169     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1271685..1281987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACT74_RS05925 (ACT74_05915) - 1272365..1272802 (+) 438 WP_005572487.1 DNA polymerase III subunit psi -
  ACT74_RS05930 (ACT74_05920) rimI 1272812..1273255 (+) 444 WP_005590261.1 ribosomal protein S18-alanine N-acetyltransferase -
  ACT74_RS05935 (ACT74_05925) recC 1273257..1276673 (-) 3417 WP_014167945.1 exodeoxyribonuclease V subunit gamma -
  ACT74_RS05940 (ACT74_05930) comQ 1276685..1276987 (-) 303 WP_005545595.1 DUF5374 domain-containing protein Machinery gene
  ACT74_RS05945 (ACT74_05935) - 1276962..1277168 (-) 207 Protein_1168 DUF2572 family protein -
  ACT74_RS05950 (ACT74_05940) - 1277162..1277365 (-) 204 Protein_1169 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACT74_RS05970 (ACT74_05960) pal 1278071..1278538 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  ACT74_RS05975 (ACT74_05965) tolB 1278553..1279833 (-) 1281 WP_005545588.1 Tol-Pal system beta propeller repeat protein TolB -
  ACT74_RS05980 (ACT74_05970) tolA 1279868..1281076 (-) 1209 WP_005545586.1 cell envelope integrity protein TolA -
  ACT74_RS05985 (ACT74_05975) tolR 1281093..1281515 (-) 423 WP_005545585.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11662.57 Da        Isoelectric Point: 10.8981

>NTDB_id=158575 ACT74_RS05940 WP_005545595.1 1276685..1276987(-) (comQ) [Aggregatibacter actinomycetemcomitans strain VT1169]
MISRLRKINYKGMSLLSLLVTLSLFSGIFLTFNQWGNVQRKSAVEIYQRFQAIQIAENQHQRRFLGLPCESQVQQNQIRF
QVICSQNQVSVKYPRGEISL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=158575 ACT74_RS05940 WP_005545595.1 1276685..1276987(-) (comQ) [Aggregatibacter actinomycetemcomitans strain VT1169]
ATGATTTCGCGGTTACGGAAAATTAATTACAAAGGCATGAGCCTGTTGTCTTTATTGGTTACATTAAGTCTATTCAGCGG
GATTTTTCTCACGTTTAACCAATGGGGCAATGTGCAACGAAAAAGTGCGGTGGAAATTTATCAGCGTTTTCAAGCCATCC
AAATTGCCGAAAATCAGCATCAACGCCGTTTTCTCGGGTTGCCTTGTGAATCACAGGTGCAGCAAAATCAAATTCGTTTT
CAGGTGATTTGTTCGCAAAATCAGGTGTCGGTAAAATATCCTCGCGGTGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(61-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.818

88

0.5

Multiple sequence alignment