Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AEI16_RS02935 Genome accession   NZ_CP012957
Coordinates   548343..549116 (+) Length   257 a.a.
NCBI ID   WP_002867721.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ001CC354     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 543343..554116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI16_RS02920 (AEI16_02945) - 544192..546126 (-) 1935 WP_002867720.1 RNB domain-containing ribonuclease -
  AEI16_RS02925 (AEI16_02950) ilvC 546245..547267 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  AEI16_RS02930 (AEI16_02955) - 547271..548353 (+) 1083 WP_074482719.1 divergent polysaccharide deacetylase family protein -
  AEI16_RS02935 (AEI16_02960) dprA 548343..549116 (+) 774 WP_002867721.1 DNA-processing protein DprA Machinery gene
  AEI16_RS02940 (AEI16_02965) ruvX 549113..549496 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  AEI16_RS02945 (AEI16_02970) - 549525..550364 (+) 840 WP_011049748.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AEI16_RS02950 (AEI16_02975) msrA 550541..551038 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AEI16_RS02955 (AEI16_02980) ppa 551080..551598 (-) 519 WP_002867724.1 inorganic diphosphatase -
  AEI16_RS02960 (AEI16_02985) adk 551608..552186 (-) 579 WP_002859580.1 adenylate kinase -
  AEI16_RS02965 (AEI16_02990) aspS 552183..553934 (-) 1752 WP_002867725.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28878.64 Da        Isoelectric Point: 6.4874

>NTDB_id=158550 AEI16_RS02935 WP_002867721.1 548343..549116(+) (dprA) [Campylobacter jejuni strain CJ001CC354]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
TKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=158550 AEI16_RS02935 WP_002867721.1 548343..549116(+) (dprA) [Campylobacter jejuni strain CJ001CC354]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
ACAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.665

100

0.977
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment