Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | AN415_RS10620 | Genome accession | NZ_CP012952 |
| Coordinates | 2222071..2222451 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain D36 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2217071..2227451
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AN415_RS10590 (AN415_02153) | tadA | 2217181..2217693 (-) | 513 | WP_001985758.1 | tRNA adenosine(34) deaminase TadA | - |
| AN415_RS10595 (AN415_02154) | - | 2217700..2218824 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| AN415_RS10600 (AN415_02155) | ung | 2218821..2219534 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| AN415_RS10605 (AN415_02156) | - | 2219585..2220181 (-) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| AN415_RS10610 (AN415_02157) | gspK | 2220411..2221370 (-) | 960 | WP_000301480.1 | type II secretion system minor pseudopilin GspK | - |
| AN415_RS10615 (AN415_02158) | xcpW | 2221370..2222071 (-) | 702 | WP_000594573.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| AN415_RS10620 (AN415_02159) | xcpV | 2222071..2222451 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| AN415_RS10625 (AN415_02160) | - | 2222441..2222995 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| AN415_RS10630 (AN415_02161) | - | 2223005..2223613 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| AN415_RS10635 (AN415_02162) | - | 2223651..2224424 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| AN415_RS10640 (AN415_02163) | - | 2224442..2224783 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| AN415_RS10645 (AN415_02164) | - | 2224795..2225775 (-) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| AN415_RS10650 (AN415_02165) | kdsB | 2225787..2226548 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=158521 AN415_RS10620 WP_000836911.1 2222071..2222451(-) (xcpV) [Acinetobacter baumannii strain D36]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=158521 AN415_RS10620 WP_000836911.1 2222071..2222451(-) (xcpV) [Acinetobacter baumannii strain D36]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |