Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   FORC23_RS18355 Genome accession   NZ_CP012951
Coordinates   722755..723936 (-) Length   393 a.a.
NCBI ID   WP_070226311.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_023 isolate 378     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 717755..728936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC23_RS18340 (FORC23_3457) - 719057..719605 (+) 549 WP_031827588.1 GNAT family N-acetyltransferase -
  FORC23_RS18345 (FORC23_3458) - 719692..720309 (-) 618 WP_070226309.1 HAD family hydrolase -
  FORC23_RS18350 (FORC23_3459) cqsS 720629..722677 (+) 2049 WP_070226310.1 hybrid sensor histidine kinase/response regulator Regulator
  FORC23_RS18355 (FORC23_3460) cqsA 722755..723936 (-) 1182 WP_070226311.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  FORC23_RS18360 (FORC23_3461) ylqF 724291..725235 (-) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  FORC23_RS18365 (FORC23_3462) - 725525..726262 (-) 738 WP_025623181.1 EAL domain-containing protein -
  FORC23_RS18370 (FORC23_3463) - 726442..728652 (-) 2211 WP_070226312.1 M9 family metallopeptidase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43780.13 Da        Isoelectric Point: 6.6123

>NTDB_id=158497 FORC23_RS18355 WP_070226311.1 722755..723936(-) (cqsA) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERGVFGAVFCRPATGRNKNIIRFSINADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=158497 FORC23_RS18355 WP_070226311.1 722755..723936(-) (cqsA) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAACACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCG
GCAATCTTCTTACAAGATGACCAATCAAAACCCGCCTTTGAGCACCAGCTGGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCTGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGAGACTTTCTTGAAGAAAGAGGCGTTTTCGGTGC
GGTGTTTTGTCGACCGGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTATCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.915

98.473

0.58

Multiple sequence alignment