Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   APZ20_RS15940 Genome accession   NZ_CP012947
Coordinates   3428882..3430333 (+) Length   483 a.a.
NCBI ID   WP_171970756.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain PXO83     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3423882..3435333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APZ20_RS15920 (APZ20_15455) - 3424028..3424522 (-) 495 WP_044756974.1 hypothetical protein -
  APZ20_RS15925 (APZ20_15460) sucD 3424695..3425570 (-) 876 WP_011258368.1 succinate--CoA ligase subunit alpha -
  APZ20_RS15930 (APZ20_15465) sucC 3425595..3426764 (-) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  APZ20_RS15935 (APZ20_15470) - 3426998..3428611 (+) 1614 WP_044756976.1 HAMP domain-containing sensor histidine kinase -
  APZ20_RS15940 (APZ20_15475) pilR 3428882..3430333 (+) 1452 WP_171970756.1 sigma-54 dependent transcriptional regulator Regulator
  APZ20_RS25280 - 3430406..3430612 (+) 207 WP_027703281.1 YhfG family protein -
  APZ20_RS28745 - 3430674..3430835 (+) 162 WP_153296778.1 hypothetical protein -
  APZ20_RS28750 (APZ20_15480) - 3430959..3431183 (+) 225 WP_325167351.1 cell filamentation protein Fic -
  APZ20_RS15950 (APZ20_15485) pilB 3431192..3432925 (-) 1734 WP_011408072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  APZ20_RS15955 (APZ20_15490) - 3432960..3434486 (-) 1527 WP_011258362.1 membrane protein -
  APZ20_RS15960 (APZ20_15495) - 3434456..3435085 (-) 630 WP_011408070.1 hypothetical protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52446.18 Da        Isoelectric Point: 6.8290

>NTDB_id=158430 APZ20_RS15940 WP_171970756.1 3428882..3430333(+) (pilR) [Xanthomonas oryzae pv. oryzae strain PXO83]
MRRAPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=158430 APZ20_RS15940 WP_171970756.1 3428882..3430333(+) (pilR) [Xanthomonas oryzae pv. oryzae strain PXO83]
TTGCGCCGCGCCCCACTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCTGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGATCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTCC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

95.652

0.602
  pilR Acinetobacter baumannii strain A118

48.268

95.652

0.462

Multiple sequence alignment