Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | APV63_RS07065 | Genome accession | NZ_CP012905 |
| Coordinates | 1478082..1478657 (-) | Length | 191 a.a. |
| NCBI ID | WP_060473685.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 7C | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1473082..1483657
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APV63_RS08160 | - | 1474735..1476013 (-) | 1279 | Protein_1378 | restriction endonuclease subunit S | - |
| APV63_RS07060 (APV63_07055) | - | 1476010..1478049 (-) | 2040 | WP_060473684.1 | HsdM family class I SAM-dependent methyltransferase | - |
| APV63_RS07065 (APV63_07060) | comFC | 1478082..1478657 (-) | 576 | WP_060473685.1 | ComF family protein | Machinery gene |
| APV63_RS07070 (APV63_07065) | tmk | 1478645..1479220 (-) | 576 | WP_060473686.1 | dTMP kinase | - |
| APV63_RS07075 (APV63_07070) | coaD | 1479222..1479695 (-) | 474 | WP_060473830.1 | pantetheine-phosphate adenylyltransferase | - |
| APV63_RS07080 (APV63_07075) | - | 1479695..1480258 (-) | 564 | WP_000780095.1 | UbiX family flavin prenyltransferase | - |
| APV63_RS07085 (APV63_07080) | flgA | 1480268..1480924 (-) | 657 | WP_060473687.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| APV63_RS07090 (APV63_07085) | uvrD | 1480921..1482966 (-) | 2046 | WP_060473688.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21288.89 Da Isoelectric Point: 8.8889
>NTDB_id=158178 APV63_RS07065 WP_060473685.1 1478082..1478657(-) (comFC) [Helicobacter pylori strain 7C]
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEAIKYLKALNIKVHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEAIKYLKALNIKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=158178 APV63_RS07065 WP_060473685.1 1478082..1478657(-) (comFC) [Helicobacter pylori strain 7C]
ATGCGCTGTTTAACCTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTACAAGAACAGGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCGACTAATGCCGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACTTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCTATAAAATACCTTAAAGCTTTAAACATTAAAGTGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGCTGTTTAACCTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTACAAGAACAGGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCGACTAATGCCGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACTTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCTATAAAATACCTTAAAGCTTTAAACATTAAAGTGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |