Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | APV63_RS01680 | Genome accession | NZ_CP012905 |
| Coordinates | 342452..342856 (+) | Length | 134 a.a. |
| NCBI ID | WP_060472956.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 7C | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 337452..347856
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APV63_RS01645 (APV63_01645) | - | 337629..338567 (-) | 939 | WP_060472952.1 | tetraacyldisaccharide 4'-kinase | - |
| APV63_RS01650 (APV63_01650) | - | 338564..339346 (-) | 783 | WP_060472953.1 | NAD+ synthase | - |
| APV63_RS01660 (APV63_01660) | ilvC | 339595..340587 (+) | 993 | WP_060472954.1 | ketol-acid reductoisomerase | - |
| APV63_RS01665 (APV63_01665) | minD | 340612..341418 (+) | 807 | WP_001019048.1 | septum site-determining protein MinD | - |
| APV63_RS01670 (APV63_01670) | minE | 341415..341648 (+) | 234 | WP_000051414.1 | cell division topological specificity factor MinE | - |
| APV63_RS01675 (APV63_01675) | dprA | 341655..342455 (+) | 801 | WP_060472955.1 | DNA-processing protein DprA | Machinery gene |
| APV63_RS01680 (APV63_01680) | dprB | 342452..342856 (+) | 405 | WP_060472956.1 | Holliday junction resolvase RuvX | Machinery gene |
| APV63_RS01685 (APV63_01685) | - | 342915..343562 (+) | 648 | WP_060472957.1 | tetratricopeptide repeat protein | - |
| APV63_RS01690 (APV63_01690) | - | 343749..344087 (+) | 339 | WP_060472958.1 | hypothetical protein | - |
| APV63_RS01695 (APV63_01695) | - | 344071..344631 (+) | 561 | WP_060472959.1 | hypothetical protein | - |
| APV63_RS08535 (APV63_01700) | - | 344661..344804 (+) | 144 | WP_060472960.1 | hypothetical protein | - |
| APV63_RS01705 (APV63_01705) | - | 344979..345305 (+) | 327 | WP_235499225.1 | lysozyme | - |
| APV63_RS07865 | - | 345600..345981 (+) | 382 | Protein_328 | DUF1294 domain-containing protein | - |
| APV63_RS01720 (APV63_01720) | - | 345981..346766 (+) | 786 | WP_060472963.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 15175.62 Da Isoelectric Point: 9.1735
>NTDB_id=158171 APV63_RS01680 WP_060472956.1 342452..342856(+) (dprB) [Helicobacter pylori strain 7C]
MILACDVGLKRIGIAALLNGAILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDRSSIEAYDNLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKKG
MILACDVGLKRIGIAALLNGAILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDRSSIEAYDNLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKKG
Nucleotide
Download Length: 405 bp
>NTDB_id=158171 APV63_RS01680 WP_060472956.1 342452..342856(+) (dprB) [Helicobacter pylori strain 7C]
ATGATTTTAGCGTGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGCTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAACCCAATGAAAGCTATGCGGACACTCACGCACGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCTAGCATAGAAGCTTATGACAATTTGGAGCATTTGGGTAGGAAAAATAAGCGGCT
CGCTATTAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGG
GCTAG
ATGATTTTAGCGTGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGCTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAACCCAATGAAAGCTATGCGGACACTCACGCACGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCTAGCATAGAAGCTTATGACAATTTGGAGCATTTGGGTAGGAAAAATAAGCGGCT
CGCTATTAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGG
GCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
95.455 |
98.507 |
0.94 |