Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AOY09_RS05725 | Genome accession | NZ_CP012901 |
| Coordinates | 1241135..1242007 (-) | Length | 290 a.a. |
| NCBI ID | WP_034037193.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain N15-01092 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1236135..1247007
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY09_RS05680 (AOY09_01113) | - | 1236996..1237166 (-) | 171 | WP_003094672.1 | DUF3094 family protein | - |
| AOY09_RS05685 (AOY09_01114) | - | 1237192..1237641 (-) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| AOY09_RS05690 (AOY09_01115) | - | 1237638..1238267 (-) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| AOY09_RS05695 (AOY09_01116) | - | 1238400..1238825 (+) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| AOY09_RS05700 (AOY09_01117) | - | 1238822..1239292 (+) | 471 | WP_003103866.1 | hypothetical protein | - |
| AOY09_RS05705 (AOY09_01118) | - | 1239289..1239978 (+) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| AOY09_RS05710 (AOY09_01119) | - | 1240084..1240293 (+) | 210 | WP_003094660.1 | hypothetical protein | - |
| AOY09_RS05715 (AOY09_01120) | yacG | 1240330..1240530 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| AOY09_RS05720 (AOY09_01121) | coaE | 1240527..1241138 (-) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| AOY09_RS05725 (AOY09_01122) | pilD | 1241135..1242007 (-) | 873 | WP_034037193.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| AOY09_RS05730 (AOY09_01123) | pilC | 1242008..1243225 (-) | 1218 | WP_003161763.1 | type II secretion system F family protein | Machinery gene |
| AOY09_RS05735 (AOY09_01124) | pilB | 1243229..1244929 (-) | 1701 | WP_119163118.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AOY09_RS05740 (AOY09_01125) | - | 1245160..1245624 (+) | 465 | WP_023129290.1 | pilin | - |
| AOY09_RS34030 (AOY09_01126) | - | 1245713..1246219 (+) | 507 | WP_225007572.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31783.78 Da Isoelectric Point: 7.7068
>NTDB_id=158137 AOY09_RS05725 WP_034037193.1 1241135..1242007(-) (pilD) [Pseudomonas aeruginosa strain N15-01092]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVAHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALLGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVAHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALLGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=158137 AOY09_RS05725 WP_034037193.1 1241135..1242007(-) (pilD) [Pseudomonas aeruginosa strain N15-01092]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAATGTCGTCGCGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTAGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAATGTCGTCGCGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTAGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.357 |
96.552 |
0.534 |
| pilD | Vibrio campbellii strain DS40M4 |
52.65 |
97.586 |
0.514 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
50.19 |
90.69 |
0.455 |