Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AO356_RS20090 Genome accession   NZ_CP012831
Coordinates   4491963..4492598 (+) Length   211 a.a.
NCBI ID   WP_162491247.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain FW300-N2C3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4486963..4497598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO356_RS20070 (AO356_20045) - 4487051..4487983 (+) 933 WP_060741215.1 ABC transporter ATP-binding protein -
  AO356_RS20075 (AO356_20050) - 4487986..4488765 (+) 780 WP_053124195.1 ABC transporter permease -
  AO356_RS20080 (AO356_20055) - 4488959..4489474 (-) 516 WP_046063671.1 DUF2062 domain-containing protein -
  AO356_RS20085 (AO356_20060) comA 4489621..4491867 (+) 2247 WP_060741216.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AO356_RS20090 (AO356_20065) exbB 4491963..4492598 (+) 636 WP_162491247.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AO356_RS20095 (AO356_20070) - 4492595..4493023 (+) 429 WP_053123850.1 ExbD/TolR family protein -
  AO356_RS20100 (AO356_20075) lpxK 4493023..4494033 (+) 1011 WP_060741217.1 tetraacyldisaccharide 4'-kinase -
  AO356_RS20105 (AO356_20080) - 4494057..4494242 (+) 186 WP_003179363.1 Trm112 family protein -
  AO356_RS20110 (AO356_20085) kdsB 4494239..4495003 (+) 765 WP_060741218.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AO356_RS20115 (AO356_20090) - 4495003..4495467 (+) 465 WP_060741219.1 low molecular weight protein-tyrosine-phosphatase -
  AO356_RS20120 (AO356_20095) murB 4495464..4496483 (+) 1020 WP_060741220.1 UDP-N-acetylmuramate dehydrogenase -
  AO356_RS20125 (AO356_20100) - 4496763..4497233 (+) 471 WP_060741221.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22810.90 Da        Isoelectric Point: 7.3613

>NTDB_id=157827 AO356_RS20090 WP_162491247.1 4491963..4492598(+) (exbB) [Pseudomonas fluorescens strain FW300-N2C3]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=157827 AO356_RS20090 WP_162491247.1 4491963..4492598(+) (exbB) [Pseudomonas fluorescens strain FW300-N2C3]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAGCTGCGGGCCAGTTCGCCGCTGGGGGAAATCCTCGCCGCGGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAGCTGGAGCGCTATAT
CAACGCCTTGGGCACCATCGCCGCCATGTCCCCGCTGCTGGGCCTGCTAGGGACGGTGCTGGGCATGATCGACATCTTCA
GCGCGTTTACCGGCTCCGGCATGACCACTAACGCCGCGGTACTGGCCGGGGGGATTTCCAAGGCCCTGATCACCACCGCC
GCCGGCCTGATGGTGGGTATTCCGGCGGTGTTCTTCCATCGGTTCCTGCAACGGCGCGTCGACGAGTTGGTCGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGTGACCGTGACGTGGACCTGGCTGGGGGCAAGCAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.19

99.526

0.858

Multiple sequence alignment