Detailed information NTG0157826

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: AO356_RS20085
• Genome accession: NZ_CP012831
• Coordinates: 4489621..4491867 (+)
• Length: 748 a.a.
• NCBI ID: WP_060741216.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain FW300-N2C3
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4484621..4496867

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AO356_RS20060 (AO356_20035)	-	4485588..4486247 (+)	660	WP_060741214.1	transglutaminase-like domain-containing protein	-
AO356_RS20065 (AO356_20040)	-	4486292..4486915 (+)	624	WP_060743154.1	glutathione S-transferase family protein	-
AO356_RS20070 (AO356_20045)	-	4487051..4487983 (+)	933	WP_060741215.1	ABC transporter ATP-binding protein	-
AO356_RS20075 (AO356_20050)	-	4487986..4488765 (+)	780	WP_053124195.1	ABC transporter permease	-
AO356_RS20080 (AO356_20055)	-	4488959..4489474 (-)	516	WP_046063671.1	DUF2062 domain-containing protein	-
AO356_RS20085 (AO356_20060)	comA	4489621..4491867 (+)	2247	WP_060741216.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
AO356_RS20090 (AO356_20065)	exbB	4491963..4492598 (+)	636	WP_162491247.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
AO356_RS20095 (AO356_20070)	-	4492595..4493023 (+)	429	WP_053123850.1	ExbD/TolR family protein	-
AO356_RS20100 (AO356_20075)	lpxK	4493023..4494033 (+)	1011	WP_060741217.1	tetraacyldisaccharide 4'-kinase	-
AO356_RS20105 (AO356_20080)	-	4494057..4494242 (+)	186	WP_003179363.1	Trm112 family protein	-
AO356_RS20110 (AO356_20085)	kdsB	4494239..4495003 (+)	765	WP_060741218.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AO356_RS20115 (AO356_20090)	-	4495003..4495467 (+)	465	WP_060741219.1	low molecular weight protein-tyrosine-phosphatase	-
AO356_RS20120 (AO356_20095)	murB	4495464..4496483 (+)	1020	WP_060741220.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 80796.58 Da
• Isoelectric Point: 9.1985

>NTDB_id=157826 AO356_RS20085 WP_060741216.1 4489621..4491867(+) (comA) [Pseudomonas fluorescens strain FW300-N2C3]
MRTGLVALALGLLAPICLPALPPLWLVAAMPVLGFMVLPFRTYPLGFFLFGLAWASLSAQWALDNRLPAALDGETRWVEG
RVVGLPQQGDGVVRFELADAHSRRTRLPTTMRLAWFGGPPINSGERWRLAVKLKRPAGLLNPHGFDYAAWLLSRGVGATG
TVKDGRLLQAARGAWRDEVRQALAQVDAHGRSGALAALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGLWPAGLAWLPWACALAFCAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKQPDPWWAWLLAFTGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGARLGPWRWWQTWTRAQWLVAVGLCPLLLIVGLPVSLSGPLVNLLAVPWISLLVLPPAL
LGTALLPVPLIGEGLLWIAGGLLDLLFKGLGLIAGRIPAWVPVAVPPWALGIAASGAFLLLLPNGVPLRVLGWPMVLLMV
FPPREHLPQGHAEVWQLDVGQGLAVLVRTRHHSLLYDAGPRFGEADAGERVVLPTLRKLGVHGLDLMLLSHADADHAGGA
QAVRNGLPTMEVISGDPDALPDELQAGPCDSGRRWEWDGVGFELWRWASAVESNQKSCVLLVEAGGERLLLTGDIDTSAE
RALLDEALALPIQWLAAPHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPQVMARYRRSGLAIYDSAEQGAIRLQL
GAFELPRTEAGHRRYWRDPPAVGPPGQH

Nucleotide

• Length: 2247 bp

>NTDB_id=157826 AO356_RS20085 WP_060741216.1 4489621..4491867(+) (comA) [Pseudomonas fluorescens strain FW300-N2C3]
ATGCGCACAGGGTTAGTCGCGCTTGCATTGGGGTTGTTGGCCCCGATTTGTTTACCGGCACTGCCGCCGTTGTGGCTGGT
TGCAGCCATGCCGGTGCTGGGGTTTATGGTGTTGCCGTTTCGAACCTACCCGTTGGGTTTTTTCCTGTTCGGGCTGGCTT
GGGCCAGCCTGTCGGCCCAGTGGGCGCTGGACAATCGATTACCCGCCGCCCTGGACGGTGAAACCCGCTGGGTCGAAGGG
CGCGTTGTCGGTTTGCCGCAACAGGGCGACGGCGTGGTGCGCTTCGAACTGGCCGATGCCCATTCGCGTCGTACCCGCTT
ACCGACAACGATGCGCCTCGCCTGGTTCGGGGGGCCGCCCATCAACAGTGGCGAACGATGGCGATTGGCGGTGAAGCTCA
AGCGCCCCGCTGGGTTGTTGAATCCACACGGCTTCGACTATGCCGCCTGGTTGTTGAGCCGCGGCGTTGGCGCGACCGGT
ACCGTCAAGGACGGGCGGCTCCTGCAAGCGGCCCGGGGTGCCTGGCGTGACGAGGTGCGCCAGGCGCTGGCACAGGTCGA
CGCCCATGGCCGCTCCGGCGCGCTGGCGGCATTGGTCCTGGGCGACGGCGGCGGGCTGAGTCGCGAGGACTGGCAGGTTT
TGCAAGACACCGGCACCGTTCATTTACTGGTGATCTCCGGGCAACACATCGGTCTGCTGGCCGGCCTGGTGTATCTGTTG
GTGGCCGGCGCGGCGCGTTATGGCCTGTGGCCGGCAGGGCTGGCGTGGTTGCCCTGGGCTTGTGCGCTGGCCTTTTGCGC
CGCCCTGGGCTACGGCTTGCTCGCCGGCTTCGAGGTGCCGGTGCGACGGGCCTGCGCGATGATTGGCCTGGTGTTGCTGT
GGCGCTTGCGTTTCAAACAGCCGGATCCGTGGTGGGCATGGCTGCTGGCGTTCACCGGGGTGCTGGTGTTCGACCCGCTT
GCCAGCCTGCGGCCAGGGTTCTGGTTGTCGTTTGCGGCCGTGGCCATCTTGATGTTCACCTTTGGCGCTCGCCTGGGGCC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAGTGGCTGGTTGCGGTCGGCCTGTGTCCGTTGCTGTTGATCGTGGGCT
TGCCGGTCAGCCTCAGCGGGCCGCTGGTGAACTTGCTCGCGGTGCCCTGGATCAGCCTGCTGGTCCTGCCGCCAGCGCTG
CTCGGCACGGCATTGTTGCCGGTGCCGCTCATCGGTGAAGGCCTGCTGTGGATCGCCGGTGGGTTGCTTGATCTGTTGTT
CAAAGGGCTGGGGCTGATTGCCGGACGAATACCCGCCTGGGTCCCCGTTGCGGTCCCGCCGTGGGCCTTGGGCATCGCCG
CTTCAGGGGCATTTTTGCTGCTGTTGCCCAACGGCGTGCCGCTGCGTGTGCTGGGGTGGCCGATGGTGCTGCTGATGGTG
TTTCCCCCGCGAGAACACCTGCCGCAAGGGCACGCCGAGGTCTGGCAACTGGACGTGGGCCAAGGGCTGGCGGTGCTGGT
ACGCACCCGGCATCACAGCCTGCTTTACGACGCCGGGCCGCGCTTTGGCGAGGCCGATGCCGGCGAACGCGTCGTACTGC
CGACCTTGCGCAAGCTCGGTGTGCACGGCTTGGACCTGATGCTCCTCAGCCATGCCGACGCCGATCATGCCGGCGGCGCC
CAAGCGGTGCGCAATGGGCTGCCGACGATGGAAGTCATCAGTGGCGATCCCGACGCGCTGCCCGATGAACTGCAAGCCGG
GCCTTGCGACAGCGGCAGGCGCTGGGAATGGGATGGCGTCGGGTTCGAGCTGTGGCGCTGGGCATCTGCTGTCGAAAGTA
ACCAGAAGTCCTGCGTCCTGCTGGTGGAGGCCGGCGGTGAACGCCTGCTGTTGACCGGCGATATCGACACCTCTGCCGAG
CGCGCCTTGCTCGACGAGGCCCTGGCGCTACCGATCCAGTGGCTGGCCGCGCCTCATCACGGCAGCCGCAGTTCGTCGTC
GATGGCGTTGTTGTCGCGCCTCAAGCCGCACTCGGTGTTGATCTCTCGAGGGCAGGGCAACGCGTTCGGTCATCCCCATC
CCCAAGTGATGGCACGCTATCGCCGCTCGGGCCTGGCGATCTACGACAGCGCCGAGCAGGGCGCCATTCGTCTGCAACTG
GGTGCGTTCGAGTTGCCGCGTACCGAGGCCGGTCATCGACGTTACTGGCGCGACCCGCCCGCCGTCGGGCCACCGGGGCA
ACATTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-166)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Competence protein (Competence) (198-462)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	60.894	95.722	0.583