Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AO353_RS01460 Genome accession   NZ_CP012830
Coordinates   312491..313126 (-) Length   211 a.a.
NCBI ID   WP_019689340.1    Uniprot ID   A0A010ST93
Organism   Pseudomonas fluorescens strain FW300-N2E3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307491..318126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO353_RS01425 (AO353_01425) - 307998..308468 (-) 471 WP_054593356.1 (2Fe-2S)-binding protein -
  AO353_RS01430 (AO353_01430) murB 308605..309624 (-) 1020 WP_054593357.1 UDP-N-acetylmuramate dehydrogenase -
  AO353_RS01435 (AO353_01435) - 309621..310085 (-) 465 WP_054593358.1 low molecular weight protein-tyrosine-phosphatase -
  AO353_RS01440 (AO353_01440) kdsB 310085..310849 (-) 765 WP_054593359.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AO353_RS01445 (AO353_01445) - 310846..311031 (-) 186 WP_019689343.1 Trm112 family protein -
  AO353_RS01450 (AO353_01450) lpxK 311056..312066 (-) 1011 WP_054593360.1 tetraacyldisaccharide 4'-kinase -
  AO353_RS01455 (AO353_01455) - 312066..312494 (-) 429 WP_054593361.1 ExbD/TolR family protein -
  AO353_RS01460 (AO353_01460) exbB 312491..313126 (-) 636 WP_019689340.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AO353_RS01465 (AO353_01465) comA 313237..315471 (-) 2235 WP_054593362.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AO353_RS01470 (AO353_01470) - 315606..316121 (+) 516 WP_054593363.1 DUF2062 domain-containing protein -
  AO353_RS01475 (AO353_01475) - 316517..316891 (+) 375 WP_054593364.1 DUF6124 family protein -
  AO353_RS01480 (AO353_01480) - 317237..318016 (-) 780 WP_019689336.1 ABC transporter permease -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23001.16 Da        Isoelectric Point: 6.8770

>NTDB_id=157770 AO353_RS01460 WP_019689340.1 312491..313126(-) (exbB) [Pseudomonas fluorescens strain FW300-N2E3]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMSTGMTTNAAVLAGGISKALITTA
SGLIVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=157770 AO353_RS01460 WP_019689340.1 312491..313126(-) (exbB) [Pseudomonas fluorescens strain FW300-N2E3]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCAATGGCGATCGTTGC
CGAGCGTCTCTGGACCTTGCGCGCCAGCCGTGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTCAACAAGGAAAAACTCAAGGAGCTGCGCGCCAACTCACCGTTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGGGTGATCCACGAGCTGGAACGCTACAT
CAACGCGCTGGGCACCATCGCCGCCATGGCGCCGTTGCTCGGCCTGCTCGGCACGGTGTTGGGCATGATCGATATCTTCA
GTTCGTTCATGAGCACCGGCATGACCACCAACGCAGCGGTGCTGGCCGGCGGTATTTCCAAAGCCTTGATCACCACGGCT
TCGGGCCTGATCGTCGGTATCCCGTCGGTGTTCTTCCACCGGTTCCTGCAACGGCGCATTGATGAACTCGTCGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTTGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A010ST93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.412

100

0.834

Multiple sequence alignment