Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   AOY20_RS03230 Genome accession   NZ_CP012808
Coordinates   685457..686614 (+) Length   385 a.a.
NCBI ID   WP_054580525.1    Uniprot ID   A0A0N9VMM1
Organism   Acinetobacter equi strain 114     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 680457..691614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY20_RS03215 (AOY20_03215) - 682171..684231 (-) 2061 WP_054580522.1 TonB-dependent copper receptor -
  AOY20_RS03220 (AOY20_03220) - 684300..684725 (-) 426 WP_054580523.1 DUF2946 family protein -
  AOY20_RS03225 (AOY20_03225) def 684814..685338 (-) 525 WP_054580524.1 peptide deformylase -
  AOY20_RS03230 (AOY20_03230) tsaP 685457..686614 (+) 1158 WP_054580525.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  AOY20_RS03235 (AOY20_03235) dprA 686628..687755 (+) 1128 WP_054580526.1 DNA-processing protein DprA Machinery gene
  AOY20_RS03240 (AOY20_03240) - 687800..688369 (+) 570 WP_054580527.1 L-threonylcarbamoyladenylate synthase -
  AOY20_RS03245 (AOY20_03245) - 688829..689719 (-) 891 WP_054580528.1 DMT family transporter -
  AOY20_RS03250 (AOY20_03250) - 689982..690524 (+) 543 WP_054580529.1 glutathione peroxidase -
  AOY20_RS03255 (AOY20_03255) - 690687..691262 (+) 576 WP_081403413.1 hypothetical protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42790.13 Da        Isoelectric Point: 8.9828

>NTDB_id=157747 AOY20_RS03230 WP_054580525.1 685457..686614(+) (tsaP) [Acinetobacter equi strain 114]
MKKGLNGTSFISALGFQKYFLLLALIISVGLSISSNIYADIARNINPPTLKANAPNVYLVKKGDTLWDISKKLLNNPLRW
PEVWASNKHVKNPHWIFPNDRLLVCHYQGQPIIGKDEGDGCTGIIHRHTNHSRTLSPQVRIEALHNTIPIIPLENIKPWL
DRSFIVSENTLKNTPYIVGIADQRVIAGAGQNVYIKGANLKIGQNYGIYAEGKPYVVNNEKDHKTNAGIELAQVASGVVI
ESSNDISTLKITNSYQQEVRRGDYVLPEHEVLYPTMFYPTYAENIPSYGKIIRIHDSLSAAATKSIVTINLGQLDGVKVG
DVFAINQAGQLTTDPRTHKKVQLPSERIGNLMIIQIFDHLSYAYVLDSQIPIHLDATLSPSIMLD

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=157747 AOY20_RS03230 WP_054580525.1 685457..686614(+) (tsaP) [Acinetobacter equi strain 114]
ATGAAAAAGGGTTTGAATGGCACATCATTTATCAGTGCCTTGGGGTTTCAAAAATATTTTTTGCTTCTAGCTCTAATTAT
TAGTGTAGGGTTAAGCATCTCATCTAATATATATGCAGACATTGCTCGTAATATTAATCCACCTACTTTGAAAGCAAATG
CTCCCAATGTTTATTTGGTAAAAAAAGGTGATACGCTTTGGGATATTTCAAAAAAATTACTTAATAATCCACTAAGATGG
CCTGAGGTTTGGGCAAGTAATAAACATGTAAAAAATCCTCATTGGATTTTCCCAAATGATCGCCTACTTGTTTGCCACTA
TCAAGGGCAACCTATTATAGGAAAAGATGAGGGTGATGGATGTACAGGAATTATTCATCGCCACACCAATCACTCACGGA
CTTTATCTCCTCAAGTTCGTATAGAAGCACTCCACAATACTATCCCCATCATCCCTTTAGAGAATATTAAACCTTGGTTA
GACCGATCATTTATCGTTTCTGAAAATACACTTAAAAATACGCCTTATATTGTTGGAATTGCAGATCAACGTGTAATTGC
AGGTGCAGGGCAAAATGTTTATATCAAAGGAGCTAACCTTAAAATTGGGCAAAATTATGGAATTTATGCAGAAGGAAAAC
CTTATGTTGTAAATAATGAAAAAGATCACAAAACTAATGCAGGAATTGAGCTTGCACAGGTTGCATCAGGTGTCGTAATA
GAATCATCAAATGATATCAGCACATTAAAAATCACAAACTCATATCAACAAGAAGTACGTCGTGGTGACTATGTTTTACC
AGAGCACGAAGTTTTATATCCAACCATGTTTTATCCAACCTATGCAGAGAATATTCCATCTTATGGAAAAATTATTCGTA
TTCACGACTCTCTGAGTGCAGCAGCAACAAAAAGCATTGTCACGATTAATTTAGGTCAATTAGATGGCGTCAAAGTTGGT
GATGTTTTTGCTATTAATCAAGCAGGACAACTTACAACAGATCCAAGAACACATAAAAAAGTTCAACTACCATCAGAGCG
AATTGGCAACCTTATGATCATTCAAATTTTTGATCATCTTAGCTATGCCTATGTTCTTGATAGCCAAATTCCTATTCATC
TTGATGCCACATTATCACCATCTATCATGTTAGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N9VMM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

53.175

98.182

0.522

Multiple sequence alignment