Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACH32_RS03710 Genome accession   NZ_CP012756
Coordinates   689839..690234 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JS395     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 684839..695234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH32_RS03685 (ACH32_03675) thiE 685437..686078 (-) 642 WP_000483162.1 thiamine phosphate synthase -
  ACH32_RS03690 (ACH32_03680) thiM 686080..686871 (-) 792 WP_060649659.1 hydroxyethylthiazole kinase -
  ACH32_RS03695 (ACH32_03685) thiD 686855..687685 (-) 831 WP_000594946.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACH32_RS03700 (ACH32_03690) tenA 687678..688367 (-) 690 WP_000396067.1 thiaminase II -
  ACH32_RS03705 (ACH32_03700) sceD 688755..689450 (-) 696 WP_000752012.1 lytic transglycosylase SceD -
  ACH32_RS03710 (ACH32_03705) ssb 689839..690234 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACH32_RS03715 (ACH32_03710) - 690428..690868 (+) 441 WP_000846751.1 YwpF-like family protein -
  ACH32_RS03720 (ACH32_03715) fabZ 690924..691364 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACH32_RS03725 (ACH32_03720) murA 691398..692663 (-) 1266 WP_000358004.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACH32_RS03730 (ACH32_03725) - 692774..693007 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACH32_RS03735 (ACH32_03730) - 693139..693232 (-) 94 Protein_696 hypothetical protein -
  ACH32_RS03740 (ACH32_03735) - 693827..694231 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=157612 ACH32_RS03710 WP_000932694.1 689839..690234(-) (ssb) [Staphylococcus aureus strain JS395]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=157612 ACH32_RS03710 WP_000932694.1 689839..690234(-) (ssb) [Staphylococcus aureus strain JS395]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment