Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   FORC17_RS08125 Genome accession   NZ_CP012739
Coordinates   1726726..1728219 (+) Length   497 a.a.
NCBI ID   WP_061058504.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_017     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1721726..1733219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC17_RS08110 (FORC17_1576) - 1722750..1723442 (+) 693 WP_065090450.1 tyrosine-protein kinase family protein -
  FORC17_RS08115 (FORC17_1577) - 1723439..1724257 (+) 819 WP_081280280.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  FORC17_RS08120 (FORC17_1578) - 1724281..1726569 (+) 2289 WP_065090452.1 HAMP domain-containing hybrid sensor histidine kinase/response regulator -
  FORC17_RS08125 (FORC17_1579) luxO 1726726..1728219 (+) 1494 WP_061058504.1 sigma-54-dependent transcriptional regulator Regulator
  FORC17_RS08130 (FORC17_1580) - 1728212..1729345 (+) 1134 WP_065090453.1 glycosyltransferase -
  FORC17_RS08135 (FORC17_1581) - 1729453..1730646 (+) 1194 WP_065090454.1 glycosyltransferase -
  FORC17_RS08140 (FORC17_1582) - 1730643..1731821 (+) 1179 WP_065090455.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55720.76 Da        Isoelectric Point: 6.5960

>NTDB_id=157442 FORC17_RS08125 WP_061058504.1 1726726..1728219(+) (luxO) [Vibrio vulnificus strain FORC_017]
MRAKVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERNTPQLVILDLKLPDMSGEDVLDWINQNDIPTAVIIA
TAHGSVDIAVSLMNKGAEDFLEKPIKADRLKTSIAVHLKRAKLEHLVENMQSRFDRPRYHGFIGACLPMQAVYKTIDSVA
PTTASVFINGESGTGKEVCAEAIHKQSLRKEQPFIAINCGAIPRDLMESEIFGHLKGAFTGATTDRKGAAMLANGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGGSKEVKVDVRIICATNRDPLKEVEEGRFREDLYYRVHVVPIEMPPLRERGNDI
VELANHFLKTYAKEDGKKFNSISKEAQSILKKYNWPGNVRQLQNIIRNIVVLNDDNQLNVEHLPAQLTTKPQTVKEPAKL
STPPQPAQAVIHEMHNGHEALNHHSLETQTSKANPLAHNAFHHSDGSIRPMWQIEREAIQNAIAFCDGNVISAAVMLELS
PSTVYRKKQAWEAEENA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=157442 FORC17_RS08125 WP_061058504.1 1726726..1728219(+) (luxO) [Vibrio vulnificus strain FORC_017]
ATGCGAGCAAAAGTACTGTTAGTCGAGGATTCCACTTCACTTGCCATTTTATATAAGCAATACGTCAAAGATGAGCCCTA
TGACATTTTTCACGTAGAAACCGGACGTGACGCGATTCAGTTTATTGAGCGCAATACGCCTCAACTGGTGATTTTAGATC
TCAAGTTGCCCGATATGTCCGGGGAAGATGTGCTCGACTGGATCAACCAAAACGATATTCCGACCGCGGTTATCATCGCC
ACCGCTCATGGTTCCGTTGACATCGCCGTCAGCTTAATGAACAAAGGGGCGGAAGATTTTCTCGAAAAGCCAATCAAAGC
CGACCGTTTGAAAACATCCATTGCCGTTCATCTAAAACGCGCCAAGTTAGAGCATTTGGTTGAGAACATGCAATCTCGCT
TCGACAGGCCACGTTATCATGGCTTTATCGGCGCGTGCCTGCCAATGCAGGCCGTTTATAAAACCATTGATTCCGTGGCA
CCAACCACCGCCAGTGTTTTTATCAACGGAGAGAGTGGCACAGGGAAAGAAGTGTGTGCTGAAGCGATCCACAAACAGAG
CCTACGCAAAGAGCAGCCCTTTATCGCAATCAACTGTGGGGCGATTCCTCGTGACTTAATGGAAAGCGAAATCTTTGGTC
ACTTAAAAGGGGCGTTTACTGGAGCGACAACCGACCGCAAAGGTGCGGCAATGCTGGCCAACGGCGGCACGTTGTTTCTC
GATGAATTGTGCGAAATGGAACTGGAGATGCAGAAAAAACTGCTGCGTTTTCTTCAGACTGGTACCTTCACCCCACTCGG
CGGCAGTAAAGAAGTCAAGGTGGATGTGCGCATCATCTGCGCCACCAATCGCGATCCCCTCAAAGAGGTCGAAGAAGGCC
GTTTTAGGGAAGATCTCTACTATCGTGTCCATGTGGTTCCCATTGAAATGCCGCCACTTAGAGAACGAGGTAATGACATT
GTTGAGCTGGCCAATCACTTCCTCAAAACTTACGCCAAAGAAGACGGCAAAAAATTCAACTCAATCAGCAAAGAAGCGCA
ATCAATACTCAAAAAATACAACTGGCCGGGCAATGTTCGTCAGTTGCAAAACATCATTCGCAACATTGTCGTTCTCAACG
ATGACAACCAACTGAATGTGGAACATTTGCCGGCTCAGCTCACCACCAAACCGCAAACCGTCAAAGAACCCGCTAAACTC
TCAACCCCACCTCAACCTGCTCAAGCGGTCATACACGAGATGCACAACGGACATGAGGCGTTAAACCATCATTCGCTTGA
GACGCAAACGTCCAAGGCCAACCCACTCGCCCACAATGCGTTCCACCATTCTGACGGCAGTATCCGTCCAATGTGGCAAA
TCGAACGCGAAGCGATTCAAAACGCCATCGCCTTTTGCGATGGCAACGTGATCAGTGCAGCGGTGATGTTGGAGCTAAGC
CCCTCGACGGTGTATCGCAAAAAACAAGCGTGGGAGGCAGAAGAAAATGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(451-487)

Sigma-54 interaction domain (Sigma54_activat)

(144-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

51.235

97.787

0.501
  pilR Acinetobacter baumannii strain A118

37.219

98.39

0.366

Multiple sequence alignment