Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   AN924_RS07640 Genome accession   NZ_CP012731
Coordinates   1516823..1517512 (+) Length   229 a.a.
NCBI ID   WP_002942700.1    Uniprot ID   A0A126UNE5
Organism   Streptococcus suis strain 90-1330     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1511823..1522512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN924_RS07615 (AN924_15800) - 1512152..1513495 (+) 1344 WP_002936685.1 DEAD/DEAH box helicase -
  AN924_RS07620 (AN924_15810) - 1513513..1513737 (+) 225 WP_002936682.1 DUF4059 family protein -
  AN924_RS07625 (AN924_15820) trxB 1513751..1514668 (+) 918 WP_002942687.1 thioredoxin-disulfide reductase -
  AN924_RS07630 (AN924_15830) - 1514678..1515217 (+) 540 WP_013730515.1 YceD family protein -
  AN924_RS07635 (AN924_15840) gndA 1515314..1516741 (+) 1428 WP_002942698.1 NADP-dependent phosphogluconate dehydrogenase -
  AN924_RS07640 (AN924_15850) covR 1516823..1517512 (+) 690 WP_002942700.1 response regulator transcription factor Regulator
  AN924_RS07645 (AN924_15860) - 1517602..1518732 (+) 1131 WP_013730514.1 AI-2E family transporter -
  AN924_RS07650 (AN924_15880) nrdR 1518804..1519295 (+) 492 WP_002938341.1 transcriptional regulator NrdR -
  AN924_RS07655 (AN924_15890) - 1519282..1520433 (+) 1152 WP_009910602.1 replication initiation and membrane attachment protein -
  AN924_RS07660 (AN924_15900) dnaI 1520433..1521332 (+) 900 WP_002938337.1 primosomal protein DnaI -
  AN924_RS07665 (AN924_15910) - 1521329..1522042 (+) 714 WP_009910601.1 NADPH-dependent oxidoreductase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26225.11 Da        Isoelectric Point: 5.3968

>NTDB_id=157371 AN924_RS07640 WP_002942700.1 1516823..1517512(+) (covR) [Streptococcus suis strain 90-1330]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELAAELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=157371 AN924_RS07640 WP_002942700.1 1516823..1517512(+) (covR) [Streptococcus suis strain 90-1330]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTGCAGAACTATTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTAGTGAAGCCCTTTGTCAT
CAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A126UNE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432

Multiple sequence alignment