Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   SanJ4206_RS06965 Genome accession   NZ_CP012719
Coordinates   1444177..1446459 (+) Length   760 a.a.
NCBI ID   WP_037582766.1    Uniprot ID   A0AAI9J7E1
Organism   Streptococcus anginosus strain J4206     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 1439177..1451459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4206_RS06945 (SanJ4206_1346c) - 1440783..1440917 (-) 135 WP_157622082.1 FeoB-associated Cys-rich membrane protein -
  SanJ4206_RS06950 (SanJ4206_1347c) feoB 1440926..1443070 (-) 2145 WP_003030196.1 ferrous iron transport protein B -
  SanJ4206_RS06955 (SanJ4206_1348c) - 1443067..1443543 (-) 477 WP_003030197.1 FeoA family protein -
  SanJ4206_RS06960 (SanJ4206_1349c) - 1443708..1443938 (-) 231 WP_003023686.1 DUF1797 family protein -
  SanJ4206_RS06965 (SanJ4206_1350) clpE 1444177..1446459 (+) 2283 WP_037582766.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  SanJ4206_RS06970 (SanJ4206_1351c) - 1446503..1447111 (-) 609 WP_003030207.1 GyrI-like domain-containing protein -
  SanJ4206_RS06975 (SanJ4206_1353) - 1447502..1448626 (+) 1125 WP_003030210.1 PTS sugar transporter subunit IIC -
  SanJ4206_RS06980 (SanJ4206_1354) - 1448702..1449151 (+) 450 WP_003030217.1 NUDIX hydrolase -
  SanJ4206_RS06985 (SanJ4206_1355) - 1449215..1449514 (+) 300 WP_003023675.1 DUF1827 family protein -

Sequence


Protein


Download         Length: 760 a.a.        Molecular weight: 84761.86 Da        Isoelectric Point: 4.9167

>NTDB_id=156787 SanJ4206_RS06965 WP_037582766.1 1444177..1446459(+) (clpE) [Streptococcus anginosus strain J4206]
MLCQNCKINESTIHLYTNVNGKQHQVDLCQNCYQIMKTDPNNALFRGMTNMNNQNNLDPFDDFFSNLGNFQNHQEPQTPP
TQSGGSYGNGGYGSNQGGGARQQTPQQPKGLLEEFGINVTEFARRGEIDPVIGRDEEIVRVIEILNRRTKNNPVLIGEPG
VGKTAVVEGLAQKIVDGDVPHKLQGKEVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRSRQDVILFIDEIHEIVGAGAAG
DGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPTVEETITILKGIQKKYEDYHHVKYTDDAI
EAAAVLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKVIDQRLVEAENLKAQATRDEDFEKAAYFRDQIAKYKEMQ
QNKMADQDTPIISEKTIEHIIEQKTNIPVGDLKEKEQSQLISLADDLKAHVIGQDDAVDKIAKAIRRNRVGLGSPNRPIG
SFLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHSVAKLVGAPPGYVGYEEAGQLTERVRRNPYSLILLDEV
EKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKVEANVGFGAAREGRTNSVLGELGNFFSPEFMNRFD
GIIEFKSLDKENLLKIVDLMLEDVNERLATNDIHLDVTDKVKEKLVNLGYDPKMGARPLRRTIQDHIEDAITDYYLEHPS
EKELKAVMTSNGKIVIKSTKKAENEANKEIQTPAADDNAN

Nucleotide


Download         Length: 2283 bp        

>NTDB_id=156787 SanJ4206_RS06965 WP_037582766.1 1444177..1446459(+) (clpE) [Streptococcus anginosus strain J4206]
ATGCTTTGTCAAAACTGTAAAATAAATGAATCAACCATTCACCTTTACACGAATGTGAATGGAAAACAACACCAAGTTGA
CCTCTGTCAAAATTGTTATCAAATCATGAAAACAGATCCAAATAATGCCTTATTTCGTGGCATGACCAATATGAACAATC
AAAATAATTTAGACCCTTTTGATGATTTCTTTAGCAATCTAGGGAATTTTCAAAATCATCAAGAACCGCAGACCCCTCCT
ACTCAATCTGGAGGTAGTTACGGCAATGGAGGTTACGGTTCCAATCAAGGTGGGGGTGCACGCCAGCAAACTCCGCAACA
GCCTAAAGGCCTCCTAGAAGAATTTGGTATCAATGTAACCGAATTTGCTCGGCGCGGTGAAATTGACCCTGTCATCGGTC
GTGATGAGGAAATCGTCCGCGTCATTGAAATTCTCAACCGTCGGACGAAGAACAACCCTGTCCTCATAGGAGAGCCCGGT
GTCGGTAAAACAGCTGTTGTAGAAGGCTTGGCCCAGAAGATTGTGGACGGTGATGTTCCACACAAACTCCAAGGAAAAGA
AGTCATCCGTTTAGATGTAGTCAGCCTAGTGCAAGGAACTGGTATCCGTGGTCAATTTGAAGAACGAATGCAAAAACTCA
TGGAAGAAATCCGTTCTCGTCAGGATGTGATTTTATTCATTGATGAAATCCATGAAATCGTTGGAGCTGGTGCAGCTGGA
GATGGCAATATGGATGCTGGCAACATCTTAAAACCCGCTCTTGCTCGCGGTGAGCTTCAATTAGTTGGTGCCACAACTCT
CAATGAGTATCGCATTATCGAAAAAGATGCAGCACTGGAACGCCGGATGCAGCCAGTAAAAGTGGATGAACCAACGGTTG
AAGAAACCATTACTATTTTAAAAGGCATTCAAAAAAAATACGAAGACTATCATCACGTTAAATATACAGATGATGCCATT
GAAGCGGCAGCTGTCTTATCCAATCGTTATATCCAAGATCGTTTCTTGCCAGATAAGGCTATTGACTTGCTAGACGAAGC
AGGTTCTAAAATGAATCTGACACTTAATTTTGTTGATCCCAAAGTTATTGATCAACGCTTGGTAGAAGCTGAAAATCTCA
AGGCACAAGCTACTCGTGATGAAGATTTTGAAAAAGCTGCCTATTTCCGTGACCAAATTGCCAAATACAAAGAAATGCAG
CAAAATAAAATGGCAGACCAAGATACACCTATTATCAGTGAAAAAACCATTGAGCATATCATTGAGCAAAAAACAAATAT
CCCAGTTGGTGATCTAAAAGAAAAGGAACAATCGCAACTGATTAGTCTAGCTGATGATTTGAAAGCTCATGTCATCGGTC
AAGATGATGCCGTTGATAAAATTGCCAAAGCCATTCGCCGTAATCGTGTCGGGCTTGGCTCTCCTAATCGACCAATTGGT
TCCTTCCTCTTTGTCGGACCAACCGGTGTCGGTAAAACAGAACTTTCTAAACAATTAGCGATTGAGCTCTTTGGTTCAGC
TGACAGCATGATTCGCTTTGATATGAGTGAATATATGGAAAAACACAGCGTAGCCAAACTCGTTGGAGCACCTCCAGGCT
ATGTTGGCTACGAAGAAGCCGGACAATTGACAGAGCGCGTACGCCGCAATCCTTACTCTCTCATTTTACTTGACGAAGTA
GAAAAAGCGCACCCAGATGTCATGCACATGTTCCTGCAAGTTCTTGACGACGGACGTCTGACAGACGGACAAGGGCGCAC
AGTTAGCTTTAAAGATACGATTATCATTATGACTTCAAACGCTGGTACTGGCAAAGTCGAAGCAAATGTTGGCTTTGGAG
CAGCGCGTGAAGGACGGACTAACTCTGTTCTCGGTGAATTAGGCAACTTCTTCAGTCCAGAATTTATGAACCGCTTTGAC
GGTATTATCGAATTCAAGTCCCTTGATAAGGAAAATCTCCTAAAAATCGTAGACTTGATGCTTGAAGATGTCAATGAACG
GCTTGCAACAAATGACATTCACCTCGACGTGACAGACAAAGTCAAAGAAAAATTAGTTAATTTGGGTTACGATCCGAAAA
TGGGAGCTCGTCCGCTCCGTCGGACAATCCAAGATCACATCGAAGACGCCATTACTGATTACTACCTTGAACACCCAAGT
GAAAAAGAACTCAAGGCTGTCATGACAAGCAACGGTAAAATTGTCATCAAATCAACTAAAAAAGCTGAAAATGAAGCCAA
CAAAGAAATCCAAACACCAGCAGCAGATGACAATGCTAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus pneumoniae Rx1

87.517

98.026

0.858

  clpE Streptococcus pneumoniae D39

87.517

98.026

0.858

  clpE Streptococcus pneumoniae R6

87.517

98.026

0.858

  clpE Streptococcus pneumoniae TIGR4

87.383

98.026

0.857

  clpE Streptococcus mutans UA159

85.141

98.289

0.837

  clpC Lactococcus lactis subsp. cremoris KW2

76.873

100

0.77

  clpC Bacillus subtilis subsp. subtilis str. 168

50.072

91.711

0.459

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

48.325

82.5

0.399

  clpC Streptococcus pneumoniae Rx1

48.148

81.711

0.393

  clpC Streptococcus pneumoniae D39

48.148

81.711

0.393

  clpC Streptococcus pneumoniae TIGR4

47.987

81.711

0.392

  clpC Streptococcus mutans UA159

47.115

82.105

0.387

  clpC Streptococcus thermophilus LMG 18311

46.314

82.105

0.38

  clpC Streptococcus thermophilus LMD-9

46.388

81.974

0.38


Multiple sequence alignment